Gene detail

Detailed information of KAJ8397406.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397406.1	POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED	AAFF_1.1_unplaced_98	2414684	2429773	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00439550

GGAAAGCCGTGCAATTTTCTGATCGATGGGTATTCTCGCGAGTACGAAGAGCTCAAACCGTATGGTAGGATCGCGATATCTTGATAGCAAAGGAACTTATGTGGTTTAGTGTCGGATGTCTCGCGATACTTCATAGTCTTCATCGGTGTGGCCCTGTGCGCGAGACGGTGTGCTTCATGGCGGTGGCAGTGACTGcgACTCTGTTTTGAACTGTAAAAGCTCTCCCAATTTATTATCTCTCCACGGGTAACGCGCTTCAGGAGACCCCAACGAAGAGCAGGTGCTAGAGCGTATCTCTTGACTGTACTATATTTCCAAAGCCAATGGCAGAACTAATTGGGTTCAAACCTCCTTAAGGGGGCAGTGCACCACTCTGGAGTTCATAAGAGCAAAGGGAGGCGAGGCTCTGATGATGGAGAATGGACAGAGCACGGCCTCGAAGCTCGGCCTGCCTCCTCTCACCCCCGAACAGCAGGAGGCGCTGCAGAAGGCGAAGAAATATGCTATGGAGCAGAGCATTAAGAGTGTGCTGGTGAAACAGACCATTgcgcaccagcagcagcagctcaccAACCTCCAGaTGGCTTCCCTGACGATGGGCTTTGGAGATCCCCTCTCACCATTACAGTCGGTGGCAGCCCAGCGTCAGCGTGCCTTGGCAATAATGTGCCGGGTGTATGTGGGCTCCATTTACTACGAGCTGGGCGAAGACACCATCCGGCAGGCCTTTGCGCCGTTCGGTCCCATCAAGAGCATCGACATGTCCTGGGATTCTGTTACAATGAAGCACAAGGGCTTTGCCTTTGTGGAGTACGAGGTGCCAGAGGCCGCTCAGCTGGCCTTGGAGCAGATGAACTCGGTCATGCTGGGAGGGCGGAACATCAAGGTGGGGCGGCCAAGCAACATTGGCCAGGCGCAGCCTATCATCGACCAGTTAGCGGAGGAGGCCCGCGCCTTCAACCGGATTTACGTGGCGTCCGTCCACCCCGACCTCTCGGACGAAGACATCAAGAGTGTCTTCGAGGCCTTTGGGAGGATCAAGTCCTGCACGCTAGCCAGGGACCCCACCACGGGCAAGCACAAGAGCTACGGTTTCATCGAGTACGACAAGGCCCAGTCGTCCCAGGACGCCGTCTCTTCCATGAACCTCTTCGACCTGGGAGGCCAGTACCTGCGGGTTGGGAAGGCCGTGACACCGCCCATGCCCCTACTGACCCCAACCACGCCTGGTGGACTGCCTCCTGCCGCTGCGGTGGCAGCAGCTGCTGCTACTGCCAAAATCACTGCCCAGGAAGCTGTAGCAGGAGCATCCGTGCTGGGGGCGCTGGCCTCGCCCGCCGCCCTGTCCCTCAGCCAGCAGCTGGGGGGCCTTCCGCAGGCCGTCATGGCAGCCCAAGCGCCAGGGGTCATCACAGGTACGCAGGCGGGAAGAGAACCGTGAgaccgagagagggagagggagagagaggtgggggtgggcaGGGGGAGGCGAGGAAGATGAGGAGCACAAATCGCGTGACCACGACCGCCGTCGCCACCAACAGCTGTGAGCTGAGAGGAgatccctctcccccaccccccgatGGGATCTGACGTGCAGAGGACGGGCTGTCTCCTGCCCTGTGCCGAATGactccccccatccctccctccctccccttcagGGATGATCTCAGGGCAGAAGTTAGGGGGGAGGTGGGTTGCAGAAAGCGTGGTATCCCTCAGCCCCGGTGCACTCACCGATCAGCTTTGTCATACGCGACGCGGGAATTCACTTTCATTAAACCCTCATGACCAATCCGTCCCGGCCGGCCAGTTGAGATCGGCACAAAGAGGGGCCTTCACATAGGTGAAGGATGACCAGGATCAGTAGGCCAAATCCTGGCTAtgctataaaaaaaactatatatacaaGAATCTTGGGTTTAATTGTGGAAAAAAGTAGGTGGTTTGCGTTCTATTTTGGTAGATTTTTGGAACTTCAGATTTGCATTGAATTCTGGGTGAGTCTTTTTGAAAGGCGGCGAGAATGCACAGCTGTGAAACATTGATTGATTTTTTGAAAccctgaggtttttttttttttttccgttccCCTTCCATTTGTGGCGACTGATGCCTCAAATGGCAGATCAAAGTATAGAATTAACCTCTTCGATGAGCCATTTCCGCTATGCTTAACTACACTGTGCTCTGGAGTCTTGGCCAAGTATGGTCATTCCGTCACCCAAAGCGTAACCCCCCAGGCCACAGACTAATCCCCGTCACTGAGTGGTGACAACGAATCCCCCTCGAATATTCCTGCCCAGACCCCCTTTGCCCTCCCTAGATGAGCTCGCCCCCCACGCCGTGGTTGTGAGCGTGTTCTGTGCATCTTGAGTGGCATGTGTTCGCTGCATGTGGTACGTGAAGTGTGCTTTTGAGAACAAGGATGCGCTGCCCCAAGGTAAGTACTGGGTTTTACAGTGTCACCCTGTGAGCCTTTGACCCGTGAACGGACTGGACGAGCTACTCGATCGGGCATGCCGTTTGGAAGCACACTAGAATGTATACTCGCAGGGCAGCTCTAATGGGTAGCAAAGGAATTTCTTTTAATTCAACCATTTTCAGTTAGCTTGTCCAATCTACTCACTCCATGTTCTCCTGTGTTCCAAATCCACTAGATCCATTAGGAGACCCTTTTTGTGGGTAGTAATTTGAAGGCACACCAGAATACTGTTTACAATGTACGACTGTTTACCAGCGATGGCACGGAGGATAGATTTTTTAACTGCTGAGGGCAGACTGGCCCAGaaccaaaactaaaataaatcataTCCCCCATAATAACATTGCATGTGGGGACTTAAATAAATGCAGATCTCAACCATGTTCCTTCCCCAAAGTTCCCCATAGAAAAGCAGGCGCCGCGTGAGTCCCGGGACTCTTGTTTCAGTTTGGCACTGTTGAGATGGTGTGAAGTATACGAAGTGCAGAGTTGCGTCCTCGTGCATCAGTCATATTAAAAGCCCATTATCATAATTGCTCACTTTTGAGTGTAAAGTCAGTGGAGACGAGCCACAATGGTGAAAGGCTCAGCGTCGTGGTAACAGCTGTTGGTCCCAAACCACCCCTGATGGAGGAAGCCAAAGAGCAAATCTTCCATAAAGCCGAGAGCTGAAGGGAGGTCTGCAGTAGGCCGTAGCTATACCAGTGGGGTAGCCTTCCCCCTTAGCTTGTTTGGCTAACTTTCCTGTTGACCGATATGGTCGACCGTCACACCACTCGATGGGCGAACCACAGACCCTTGCCTGACACTATCCCCAAAGCTTGTGAGATCCTTCAGAAAGATGCAAGAGATTCCTGTGGGGCGAATGGCTCCAGGACCCCTCCACACGCTTTCTCAGTTCTGAGCGCAGCAGAGGTGGAAGTGAAGGAACGGTACGGTCATTCCATGCATGGCTGTGTCCCTACAGATTGTATGTGTTGACTCTTGAAgtttttgtaaatgtgttttcattCCACCAGCACAGACGGCGTGGAAGCATCggcactccatctctctcctcacGCGTGTTGTCTCATCCAGCTCATGTTATAGtctctatttttttccccaggttGCTGTTAACTCCTACACAGTACATAAAGCTGGTTCGCCTGTAACGGGACCTCTCAACTAATAGATTCTCTTCtattttctcttctctccttgtctctctctctctctctttctctctctttctctctcttccccctctctgacCGTCCACAATTGCACCAACCGTGGCCACTAAATACCTCCCCCTTGCTGCACATTGACCATCAAGTGTGAAGaggactgtctctctctccaactgCTAGTACCCCCCCATAAACAAATCTCACATTCCCATTGGCCAGTGAGTTACAGATTCCCGTCTGTTTGTGGATTTCACTTTGATGTGCATCAACACTACATGACAGGGGCCTTCAAGGCAGACTCCGAAGGATCTTTGGTGCAAGGTGTGGCTGTTGAGATGTCAGTGGGCTTTTATAGACCGCTCGGCCACCCTCACATTAAAGATGCAGCAACggattattttaattgaatacatcaaggttttattctttttgttttgtggaaaaaaGGAACCCTGTAATGGTTTGTTTTATCCCACAATTTGGTAATCCAAGCATTTACATTCTAATTCCCCTGCCTCCAGTAGTTCCTTACTAAGAAATGTCACAGGTAGCCATTGGAAAAAAAGGGCGCACATCAATGTAAGCAGAACCTTGTTATATGAAAGtcggtgtatttttttgtaattttttcacaaagtttgggGTCTTTTCCTCAAACTCAGGCAGAATGTTTTCTGTCTGTTCACGAGATCTTTCCTTGTCCTCTGGGTGCTTCTGGGAGTTATGTGTATCAGTATGTGGGGCTTAGAGGTCATCTGATCCCTTTTGGTTGTGGTCATTAGGAGTGACAGTGCCCACATGCATGTGAGACTGGACTGTGAAAGGGCCATTAGTTAAAAGACACCAGGTTCATCTcaagctttctttctttttggcaTCTTCCTCTAAAGGCAGCCATAGGAGTGTTAAACCCAGACCAAATGAGAACTGTCTTGAGTGGCAGttgccagtaaaaaaaaaaaaaaaaaagaactgcatGGCctctttgttttggttttggggggtggggaggttaGGGTGCGTTGTGACATGTGACTTCAAGCAAAGGGCCCACAGTTCAGCCTGCGGTTGGTTAAACCCTCTGACCAAAAGGCAGGGGCAGCTTCATTCGGTCTGGGGCACTGAAGTTGACGGCAAGTTGGTTTAACCTTTCGCCTCTGCaatctctctttcctcccttgCTTCCCGCCcgcctcccttcctccccctcccc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR006532	Family	Poly-U binding splicing factor, PUF60-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034209	Domain	PUF60, RNA recognition motif 1	Interproscan
IPR034211	Domain	PUF60, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051974	Family	Poly(U)-binding-splicing regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47330	POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-