Gene detail

Detailed information of KAJ8397232.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397232.1	ABC TRANSPORTER G FAMILY MEMBER 28	AAFF_1.1_unplaced_99	1732235	1772713	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00440660

Transcript

AAFF_T00440660

ATGCACTCGctgtcccccaaccccccactttGCACTGAGCTCAGTGGAACGGTTGTGCGTCACGATACAGCTGGGATAGCAGGGGCCATGGAGGCAGAAAAGGACACCAGTGATTTGCACCTCAATCACATTGGTATGGCTGAGAAGTCCTTGGAGCCTGAGTCTGTGTGCGTATCCGTGGAAGAGACCATGCACAATGGCGCTACACAGGAGGTGCCCTTGCTGACACACCTGAAGAAGGTGGAGAATCACATTACAGAAGCCCAGCGCTTCTCCCATCTTCCAAAGCGTTCTGCCGTCGACCTGGAGTTCACTGAACTCTCCTATACCATCCGCGAGGGCCCCTGCTGGCGAAAGAAAGGTTACAAGGCCTTGCTGAAATGTCTTTCTGGAAGGTTCTGCAGCCAGGAGCTGATTGGAATTATGGGGCCCTCAGGGGCGGGAAAGTCCACCTTGATGAACATCCTTGCCGGCTACAGGGAAACTGGAATGAAGGGACAAATCTTTGTGAACGGGAAGCCGCGAGACTTGCGCACTTTCCGCAAGATGTCCTGTTACATCATGCAGGATGACATGCTGCTGCCACACCTCAGCACACGGGAGGCCATGATGGTCTCGGCCAACGTGAAGCTCAATGAGAATATGGACGTGAAAAAGGAGCTGGTGAACGAGATCCTAACTGCCCTGGGACTGCAGGAGTGTGCTCAAACCCGCACCGTCTCTCTGTCGGGGGGGCAGTGCAAACGCCTGGCCATCGCCCTGGAGCTGGTCAACAACCCCCCTGTCATGTTCTTCGATGAACCCACCAGTGGGCTTGACAGCGCCTCCTGTTTCCAGGTGGTGTCCCTCCTGAGGTCCCTGGCACAGGGTGGGCGAACCATCATCTGCACCATCCACCAGCCCAGCGCCAAGCTGTTTGAGATGTTTGATAAGCTCTACATCCTAAGCCAGGGCCAGTGCATATATAAAGGCACGGTGCCACACCTCATCCCTTACCTGAAGAACCTGGGTCTGCACTGTCCCACCTACCACAACCCTGCAGATTTCATTATTGAGGTGGCATCGGGGGAGTATGGAGACCTGAACCCTGTGCTGTTTGAGGCAGTTCAGGGGGGAATGTGTGACGTGGAGGAGAAGAAACCTGACCCTGCCTCTCCCCCCTGCAGCTCTCAGTGCCCCAGCGACCTTCGACAAACTGAAAGCCACACATTCGCAACGAGCACCTTGACGCAGTTTTGCATTCTCTTCAAGAGAACCTTCATCACAATATGCAGAGATTCGGTGTTGACACATCTAAGGGTGATGTCACACATCTCTATCGGCGTTCTGATTGGCCTGCTTTACCTAGACATCGGAAATGATGCCAGCAAAGTCTTCAACAACACCGGCTTCCTCTTCTTCTCAATGCTGTTCGTCATGTTCGCTGCTCTGATGCCCACTGTGCTCACGTTTCCTCTGGAGATGTCAGTGTTTCTGAGGGAACATCTCAACTACTGGTACAGCCTGAAGGCCTACTACCTTGCCAAAACAATGGCTGACATTCCATTCCAGaTCATCTGCCCCATCATGTACTGCAGCATTGTGTATTGGATGACGGGCCAGCCCCCAGAGGCCAGCAGGTACCTGCTCTTCATGGCCCTGTCCACCTGCACTGCCCTCGTCGCACAGTCACTGGGGCTGCTGATCGGGGCTGCATCCACCTCCCTGCAGGTGGCCACGTTTGTCGGTCCCGTCACGGCTATTCCAGTCCTTCTGTTCTCCGGCTTCTTTGTCAACTTTGACACCATTCCCAAATATCTTCAGTGGAGCTCCTACCTGTCCTACGTCAGGTATGGCTTCGAGGGCGTGATCCTCTCCATCTACGGGATGAACCGCACGGATCTGGAGTGCCCGGGGAAGGGCATTCCGTCTGAGGCAGCGAAGCCATCAGTATGTTTAAGGCACATCGCAGCGGGCACTAGTGGGTGCCGCACTATGTGGCACTGCTCCAGGTGTCCAGGTGCAGGAGCTGTGATGAGGTGGCATGGGGCACGGCATGGAGTTCTCTTCAGAAACCACATCCTGGTCGCCTGCAGGCAGAatatGAAATTCAGCCATTTGTCTGGAAAAGTCAATGGCACGATCCACAGGACACTCGTCTGTACCTTGGACAGACAGCCCCGTCCCAGTGGAGCAGCATGGAGCCCCCGGAGACAcacccctctctacacccccgGTCTGAACGCAGTCAGACCTCAGTGTTCCAGTGCAGGGGGGGCAGATCCCATCCAGGTCCACAAACAGAAGCTAAGCCTGTGGTTCGGCCACCTGCCCCAGGAGGAGAGGCAGTTCGGGGACGTCTTCACCCACGAGACGATGCACGTGGACCCCCTGATCGTGGAGAGGAGACCGGAGGAGAGCCGTGGTGTCCTACAGGGGCCCTCCATGCTGCAGGCCTTCAATCACCCCTCCCTCGTCGTGGGCCAGCTCTTTGAAGAAGGAGGCTGCTGTGCTGACAGGGGGGTCAACGTGCTACTGTACGGGGCGGTGGGTACAGGGAAAAGCACCGTGCTCCGTAAGATGGTGCTGGACTGGTGTGCCGGGTCCACGCTGACCCAGTTCAGCCTGCTCATCCCCTTCTCCTGTGAAGACCTGTCCCAGCTGAGCCGGCACACCTCGTTGCGTGACCTGGTGGGCAGGAAGTACCTGCACCTGCGGCGGACGCCGCTGCTGAGCGGGGAAGGCGACCAGGCCAAGAAGGTGCTCTTCGTCTTCAACGGCATGGAGAAGATGCGGCTCGACTTCCGCATCGGATCCACAGAGCTCTGCAGCGACCCTAATGAGGCCCTGCCGTCTGGAACCATCGTGGTCAACCTGCTGAGGAAATATCTCCTGCCCGAGGCCAGTATCATGGTCATAACCAGATTCTCTGCCCTGGACCGCATCCCACCCAAGTACGTGAACCGCTATGTGCAGATCTGCGGGTTCAGCGACCCCGATCGGCAGCGTGCGTACTTCACCAGCAGACTGCTGCAGCAGAGCACAGAGGTGCCCAGCGCAGAGGCCGAGTCCCTGATCGAGCTGCTGTACCTCAACCTGCAGCGCGAGAGCCAGCTGGGCACCGCCTGCTTCCTGCCCTCCTACTGCTGGCTCACCTGCGCCACGCTGCACCTGCTGCACTTCACCAGCAGGGTGTCGCCCGTCCGCACTCTCAGCGGCGTCTACACCAGCTTCCTCCGGCTCAACTTCGGCGGGGAGCTGTTGGACGCGGCGAGCGCCCGGGACCAGCAggccgccgcctcctcctccacgtCTCTGATGCTGTACGTCGTGCGCACGGTGGGCAAGCTGGCCTTCGACGGCGTCACCAACAGGCGCACCTCCTTCTCGGAGGACGAGCTCGAGCAGTGGGTGGGCGGCAAGACCAAGACGGACGAGGAGCTGCGGCAGCTGGCCGTGTTCCGCACCGACGTGCTCGACTTCTTCCTGGTGCCCTGCGTGGAGACGCGCCGCTCGGCCGAGGCGGCGGGCGAGGCGGCGGACGAGCCGGAGGCGAAGCGCTACGTGTTCGCCGTGCCCGCGATGCAGGAGTACCTGGCCGCCCTGTACGTGGTGCTGGGCGAGAACAAGACCGCCCTGGAGAAGGTGACCCAGCAGTTGTCCTCGGCCATCGGGCAGGCCGGGGAGGACGTGACCACCCTGGTGAGCATCCTCTCCAAGTTCATCCCTCTCAGGATCTTCGCCGTGTTCAACCTCCTCCGGCTGTTCCCCAGCCTGTTCGAGAGGATCTCCAGCCACAGCAAGGGCCGCATCGCCAGGACCATGGCGGCCGAGATGTTCCGCTCAGAGGACAGCTTCAACGAGGACGTGCTCGACCAGGTGGAGCAAAGCCTGCTGGGAGTGCAGGGCCCCCAGCCTCAGCATCAGCTGGAAAGGAAGGCCTTCGAGCTGTACCCCATATTTATGGGCGGGCTGCTGCACTACGGCAACCGGGTGCTGCTGGAGCAGCTGGGCTGCAGCATCAAGAGCTCCACGGTGTCCCAGATCACCAGCACCCTCCGGAAGCAGCTGGTGAAGGAGATCCGGCAGGAGCAGCCGCCGGAGGAGCTGATGgacctcctcctgctcctgtaCGAGTTCCAGAACCCGCGGCTCTCCGCCGAGGTGCTGGGCTGCCTCAAGGTGCTCCGCCTCTCCAACGTGCGCATGACGCCGTTCAAGTGCTTCATCCTGAGCTCTGTGCTCAGCTGCGCCCCCTCCAGGCACCTGCTGGACGAGCTGGACCTGTCCGCCTGCCACCTCACCCAGGACCTGCTGCAGATGCTGCACAACGCCTTCCTCTGCACGCGCAGTCTGAATCTGCAGTTTAACAGGTTGGGCCCTGAATCCTGCCTAATCCTCAGAGATCTGTTACTTCACCCCAGCTGTGCAATTAGATCCTTACAGCTGTGTGATAACTCCTTGTTGGAGTCGGGGCTGCAGTGCCTGCTGGAAGCCCTCCCGGGGAACCAGTCGCTGCGGCGGCTGTCTCTGATGCACACGGGCCTGGGAGACGTGGGAGCGGTCGAGCTGGCCCAGAGCCTGGCGAAGCATGAAGGCCTGGAGGAGCTCAATGTGGCCTTCAACAACATCGGGGACAACGCTGCTCTCACGCTGGTGGATGCCTGCAGAGAGCATCCCAACATCCACACAGTGCATCTGTACCTCAATCGCCTGAGCGAGGCAGGCAAGCAGTCGCTGTACGTGCGCGGGGTCTCGCAGGAGAAAGCTAGCCAGCGGGTCAAGGTGCTGGCCTCGGTGACCGAGGGATCGGACCTTTCTGAGAACTGGCACCCGATCCTGAGCGTGATCCAGCAGAACTCGGCCTCCTGGGAGCAGAGTCGCGTGCGTGAGCAGCTGCAGGTGTTTCTCCGGGACCTGGAGTCGGGCCGCCGCCAGCAGCACAGCTTCTGGAAGAGGCTGCACTTCCGCAGGGTGGAGAAGGGCGTGAGGGCAACTCTGCGCATGCTGGAGAAGGGCGCCCCTTAGAGGGTGGAGTGGGAATAGATCAACAATCAGGGCCacatttactaagatagtcacagCGCATTAATGACTAAGACTGGTGCTAATTACGCGATCAaaccctcattcgcaatttgcggtaggatacgTCCATAAAAAGGGTCAGAAACAATATGGCATGCTCACACATCCAGATaacaccaagaaatggatacggagcaaccaggcacaagtagctgGGGATAAAACAAGTAATAAAAGAACTTGAAATTGACAGATCAgtattggtcaatgaggtacagcatcacaatgTTGTATTACAGcacaggaaaacaacaccaacagagaagaatttttttttgattCGAGTGACAtcacgaaataaataaattaattggacataacaaaacaaacagtagatgatgtaaagaaaatatgacatgacgttaagctgcgtccaaaagaaaaactttcctacaataATGCAGGAAAAAGACACTGGTGGTGGTCCTGGTGAGGAAGGAATATTAgaacaagaataaaaaatataaacggTTAAACTTGTGAtaggagaaggccacagagcatctaaACTGAAACTAAAACTGTgttcatgattcattctataccctcctgaccacaTACTCACAATGAGATAAtggttcaaattcagaactgtgtttttatactgactgctagctgatgacaaattggtcaatagagaTCCTGCAtcttttcatataattttttaaaagttttagtaaataatgtgtatgtaaatgtatgtatgctatatacagtgatgcttgaaagtttgcaGAACCCCTTGTGAaatcatagaaatctagagtttttaccacaaaatccttatttaatcagaaccagccTTTTCTTAATTGAAATAAAGGATCTATATTTATcaatttcatatatttatagaggaaattgtgcatatggtagagtaaaaatatggaaaaaaggaATTAGTGAAGGTGggaaaataagtgaacctcctgttgccttacTTAAATgcaagtaggtaagtagaatcaggtgggtatataattgcgtaccaagttaaccaatcaaaggtcagatctttaggaaagagtttgggtggcactctcataaatacagctaagaaacctggtcagtttggtgttacccatacaggtgaatgccaaacacaccatgccgggatctaaggagacctcagaggacctcaggaagagagtagtgagtgcgcatcagtctggggaagaatataaaatcatatcaaaaggacttgggctccatcagcccactgtgagacaaataatatacaaatggagagcgtttaacatgacagcgactctgcctagaagtgggcgtccttctaaaatatcaccaagagccacaagaaaaataataaatcaagtaaaaagcaccCCAAACCTGgaggtttctggaagtctgttctctggacggatTAGTCCAAAATCgacctttttggtcacaatcaaaaatgccatgtctggcgaaaccccaacactgcccaccaccaaaataaccttatccctacggtcaagcatgatctggggctgcttttcttcctcttggCCTGGATGACTCGACATCATTAATGAACCATGAATTCAGGCCGTCAGTCCAAGAGCTAACAAGCGTTTGAAGCATTCAaacaaatctaccaaagaatggctcaggagaaagaagttctgtgttttggattggccaagtcaaagtcctgatctaaatccaatcgagatgctgtggcaggacctaaagtgggctgttcatgccagacagccctcaaacctcactgagtttGCCGGGTTCTGTAAGCAGGACTgggcgagaatccctcaaagaagatggcagagtctgatcagtggctataggagacagttgcttcaagtcatcgctgctaaaggaggtgccacaagttcttgattgaaggggttcacatatttttgcacagaaggatatctgagtttttgttacataaaccagttttgttaaattaacaatgaaaatatatcatatttctttgtgtgtgtccttcaTTTGGGATATCTTTGTTAAGATTTGAAGTTTAGATAAAGATTatatagggttatttttctacaatatatgaaaataatgaccaccccctgcagggttcacaaactttcaagcatcactgtagaatatatatttaaaattctgacttgtCTATAGACATAGGTACCTGAAAATGAAGCTGTCATGGCATGAAccagggtactttgcaacaacattcgTGAATATTTGTTTTGCGTTGCTGGGACAGCAATTAGCACCTCGTAAAGTGCAGTACAAAACTGGAATTGTGAAAcacctaggcgatatcagcgctaataaaatactgcctggtttcaGAGTTcataaaattctcacgcaaagaggggagtggcaattaaggcatgctttcgtgaatcagacggaatacttaatcaacctaatttacaaaatctccaccctgttttggCACGTTCACcgcaggtatacatatgcatgagcggatttaactattcatctgaaGGAAAGACGCAAAGTGAATTAACCCCCGCATGTTACATCCTAATAacgatttgactcattgcgaccATTTAATAAATCCTGCGTTgtaaaagcagtcgcaatccttcaGTAAATCTGTCCCTCAGTGTCTGGGATTCATGGGATTATCTTTCTCTTCACTGTGTAGAACACATAGAGCTTTGCAGAATAGCaacatgggaaatgtagtcttaACCCAAATTCCCTGCAAGAAAGGGCCCACATCTGATATGATCATTCAGTGATTATATTGGCTTCACATATTAAAGAGCTTACACCTGCATGTCGTCTAAACAAGTGTGTAATTGTAAATTGAGTCTGTCCAACAGACATTGTGAACCAGGACAGTCCAATACAGGCTTAGCACACTCTACCCCAGCATTGCTGGATGTTGTAAACTGAAGAGAAACCAAACCGCTCTGGTTTAAGAAGTGAGGTTAGCCTGAACTTATAGCCATATCATTGAGCCTGTCGATCTAAATAGGGGCACAGAGGAAAGTGTGAATGTTGGTATTAAAGCCATAATCAGTTAATCCACTTACCAATGCCTCACATTTCAGAAAGGAGTAACAAGACAAGACATAAATAAGATGGCTGAGTAAAAGATGGGAATAATGGctgcctgttgttttttttgtttactttcCATCTTCATGTTCTCCATCTTGAATTATAAGCAATaatgcaataaaatgttttttgtttgtttttacttgaAGAATGCATAACTGTTGCACATTCTGTGTGGTCTAAATAATCAATGTAATTTCTAATGAACAGAAAGAGTACAGGTAAAACATGGGATTGTTACATAAATGTCAATATGAATTTAGCTTTTCATACAATAATATTTGGAAAAGTATTTTCTTGAAAATTTTCCCCAGTCTACTTTGTGTCATTGACCCTGGATTCATTAAAGCATGAAAGAGGAACATTAAGAATGTTTGCCTCAATGCATTTCTAAAGGGGGTGTCtgaaattgtttgtttttagttttcattttaataaaagAGTGATGATATTGCATCAAGGCTGTTTTATTTGGATAGTTTAGTCAGCAGAGCTTACAATTTCAGTGAACTTTGTCCTTCACTTTCATTTTCTaatgtaaacacattttttatattttcagttCAGTGCTCACTGAAACGACTTACCATTGAGTCGTCtggcaggcgcttttatccaaagcgacttacgagAGTGCATTCATATGGCTAGGGATGACtgctagagctatcgaacaggAAGTTCGTCTAATTGACATTGGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF01061	ABC2_membrane	ABC-2 type transporter	Family	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF19055	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan
PF21402	NLRX1_C	NLR family member X1, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043926	Domain	ABC transporter family G domain	Interproscan
IPR048900	Domain	NLR family member X1, C-terminal domain	Interproscan
IPR050352	Family	ATP-binding cassette subfamily G transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033344	Biological Process	cholesterol efflux	Interproscan
GO:0034041	Molecular Function	ABC-type sterol transporter activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042632	Biological Process	cholesterol homeostasis	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-