Gene detail

Detailed information of KAJ8397207.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397207.1	SUCCINATE DEHYDROGENASE	AAFF_1.1_unplaced_99	987480	992847	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00440410

AATGAGTGTGAGTGTCCATTCAAATGACTGGAATTCATGATTCAGACTTGACCTATTGCCTTTAATCAGGTCCCGAACAAGATACAATTTGAATCATTAGTCGATATTAATAACGATGGAGGGAGCAGTTGACAGGGCACCCTCTGTGTGCAGTCCACCCGTGATGTACCCACAAATTTAGACCCTGAAATAAACCGAATCTATGATATCTTGAAGAATACACCATCTTTGAGGATCCATGCTGGAGACGAGTTTCAAAAACGACTTCCGGGTGAACACTGTGACCTTGGTTGATTTTGTTCACCATGGCGGCACTTGTCAGGTTAAGTTCTCTGTGTCACAGAGGTGTTAAACctctGTTTCTCAGAAATGCTCTCCTTGTCCGACCTCTGGTGGCTCATAAAAAGAGCAGCGATCGCTCCTCCTTGCTGGCCTCCCAGATACATGTGTCTCCGTCTCAATACGCAGCAGGTGGGTCCAAGGCCGCGTCTATGCACTGGACAGGGGAGCGAGTCGTGAGCATTTTCCTGTTGAGCTTGGGCCCGGCAGCCTACATGTTCCCTGGCCCTGTAGTGGACTACTCTCTGGCGGCTGCCCTCACTTTACATGGCCACTGGGGCCTTGGCGAGGTGCTGACAGACTATGTTCATGGAGACCTGAAGATAAAGTAACAGGCGAATGGCAGCCTTTGAATGGCAGCCTCCTTGCCCTGTCAGCAGTCACCTTTGCTGGCCTCTGCTATTTCAACTACAACGACGTGGGCATCTGCAAGGCGGTGGCCATGCTCTGGAGCTTATAACCGACAGACTGACGGAGCAGGCAGGAACCAGGAAATGCGCCACCCTGTTCCAGCTAATTGTAAACATTCAAGGGATTATGTGTAAATTCTATAAATATATGCGTTTCGTTTGAAAAGGTAAAGAAAACACAACCGTGATCCACAATCGTTTTTTATTGTAATTCATGTTGATtcagcatttttcattttaagttaagAAGGTTTACGACAGAAGTCGCAGGCCTTTTCTGGCACGTCACTGTCGTCTTCCAGCTGATCGCCATGCCTGTCACCTTTACcgtcacatacacactcttacCTTTGCATATGATGAAATCTTTCTGTTCTTCTGTGGCAGTGGAAATTGTTGAAACGTAATTTAAACGAATATTCAATACCGGCCCCACTCTACAGCATCATTAACCTTCATAAATCAGTTGTCTTGTATGTAATTTAATAACCTGCTTGCTGTTGAATGcttgtgatttaaaaatatatatatatatataaaacaaacaaaaaaacatgggaCAGTACCTTAAGCTTTTACCTGTGCTTCCTGTGCTTGAAGTATTAAATTCAGAGGCCTCTTCGCATCTGCTCCCATTTGCTTTCTTgcccctttatttattttgaagagGCTTTCTGCGTATTTAGTTTTCTATTGCAAGCAGTTTGTAGTAAGCTGTATATAAGCTAAACCACTGGTGTAAATGCCAGGTAATGCCTGAGGGCAATGTGCCACAGAAACGGCAGGCGCCAGagatctgttttttgtttgtgtggtttGGCTGACCAGAGTGAATGGGAGATGGGCAGCATTGGCAGTATTTGATTATTGCACTGTTCTCCTTGTTGTGCTTATTGTCTTACTGCTAAATAAATCGACACTATTTTGCATTAAAAGTGAGCTGTGTTGTCAGTGATCCATGGCAGTGCATGCATTTGCATCTAAGCTGTGTTTCACAGACCTTTCCTCACAGCCTGCACCATGAACCAATGTTTCAGAGAAGTGTATTTcatttggcctcccgcgtggtccagtggtcacaacgttcaacgctggccatggagaccggggttcgattccccgtctcgccagagtcggctctggccgggagtgcggcaattggctgtccgccccagggaggggggagggaagccgacaggatgttcgctgtgcacaggagtggctctggggtgccggcgttatggtcgatggcttggcgatgcttcgcctttgacaccaccggtcacagggctatggcagcgaactcatagtatgagggggggattgacatgacatgaaaatagccGGTGtggttggctaccaaattgggataaaaatcagaaacaagaaaaaaaaaaaagaagtgtatttaatttattttaaataaaagtgcCAGTCCATACTTGCAAATCTCTACAAacattttggggttttgttcttttctttgaCATTTCAGGGCCTCTGGTTGTTATCCGATAACACTAACATGGGGGGTTATTGGCGGCAAGCCTTATCACGTATGCCTGTGTCAAGGTTCTACATAGGTCTTCAAGCACTTCTTTCTGAAAGACAGAAATGTCTTTAGCCTGCTCACTGTGAAGCCTCTTgctgatataaaaatgtgtgtgaccATTTAGTGAATCCTCATTTTTGGACATGTACTACTGTTTAATTGTACATGTTGTGTATGGGTCATGTTTTTGTGTAACGCATCAGGATCATCTTAGAAACCAGCCATGAAACTAGAAATTATGGGAAACAGACTTTTTCCTTTTACATTTTCCCAAATGTCAGCGCCTGATTCCAAAATGAAACTGTTACCGGTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05328	CybS	CybS, succinate dehydrogenase cytochrome B small subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007992	Family	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS	Interproscan
IPR034804	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13337	SUCCINATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005740	Cellular Component	mitochondrial envelope	Interproscan
GO:0005749	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0048039	Molecular Function	ubiquinone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-