Gene detail

Detailed information of KAJ8397028.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8397028.1	CXC DOMAIN-CONTAINING PROTEIN-RELATED	AAFF_1.1_unplaced_101	1081520	1130901	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00010820

ATGATGGCTACACTACCAATCAAGAAGAACAGGGTTGACTTCTTCAGACAGAGCAGAGAGTGTGACTTGAAGGAGTTCTTCCGTCATGAGAACCAGTCACATCCTGCTGCCCTCAGTGATGGTGGAAAGCTCCACACCTGTCAGAAATCCCACCTCACTACCATTCTTGAGAGCCAAGTTACAACCCCTGAGGCAGAGCCAGACGCCGACACCATCATCATTGATGGTGCAGCGTTGGTGAACAGTCTGCCCCCACGGAGTTCAAAGACATTCGAAGAGTATGCAATGCTCGATGTCCTTCCTACAATACAAGCATACTCTACCAAGTACAAGAgaacagacattgtgtttgatgtctACCGGCCATCTAGTCTGAAAGCTGAAACTAGATCAAAGCGAGGACGCGGGGTGAGACGCAGGGTGACAGGGAAGGGCAAAATTCCCTCAAACTGGCGAAACTTcctgagagaaaatgacaacaaagccGAGCTGTTCAACTTTCTGGCTGATAAGATTGCACGTGTGGCCACACCAAATGTGGTCATTGTGACCAAGGAAGAAGATGCTGTCAGCAACCGCATTATCAATCTGGCTGGGGTGGCACCATGCAGTCATGAAGAAGCTGACACGCGGATCTTTGTGCATGCCAGGCATGCAACAGAAGCAGGCAGCAAAGTCATCATGGTCAAAGCCAGCGACACAGATGTTGTCGTCATCGCAGTCAGTGTTCTGCAGGCACTTCAGGAGCTAGGTCTGCAGCAGTTGTGGGTTGCCTTTGGCCAAGGACAGCACCTGAGGTGGGTTCCTGTACATGACTTGTGTTGCACTCTTGCAGAAAAGAGCAAAGGGATGCTCTTCTTCCATGCCTTCACTGGCTGCGATGTCGTTTCAGCATTCCGTGGCAAAGGGAAGAAGTCTGCTTGGCAAACCTGGGATGTTTGTGATGAGGCTTCCGGTGTCTTCAGCAAACTCAGCCAGTACCCACCGGTAGTGGATGATGAAGACCTGAAGACCTTGGAGAAGTTTGTGGTCATGATGTACGACAGATCCAGCACAGCTGAAGGTGTCGATGATGCGAGGTTGGACATGTTTGCTCGGAAGCAGAGGCCGTATGAAGCCATTCCTCCAACCCGATCAGCGCTGAAGCAGCATGTGAAGCGTGCTGCCTACCAGGCGGGCTGCATCTGGAGTCAGTCAACAGTACGTCAACCAGAAACGCAGACTCCTGCCAACTGGGGCTGGACCAAGAAAGGAGATCTGTGGCAGATCGTTTGGACAGAGCTCCCACCCATTGCAGAGAGTTGCCAGCAGCTGACCAAGTGTGGATGCAAGTCGGAATGCTGCAGTCGATGCAAATGCTACTGCTTTGGTCTGACCTGCACGGCACTGTGCAGCTGCAGATGCGAGACGTTAATCCACTGTTCGCTGACGTCCGGTGATAGGATGGCGCAGTGGAAACAagtgcagcagcagctgcagtgcCTGTCCACCCAGAACCTGAGCAAGCTCTacccccccaccttccccatGGATGTCCGCTGCTACCTGGCCTCCTGGATTGAGGAACAGTGCTGggatgAGATTATGGACAGTCCTGATTCGGATGCTCGGGCGATGGGGATGCTGGAGCAGATCATATCCCTCCTTCAGAGAGTCGTGCAGGAAAGCAGCAACGTGGTGGAGAAGATGAGGCTGCAGCACATCTCCAGGAACATGaATGTGTTCCGCTCCCAACCACTCCAGCTGGTGAAGACAGTCCAGGATATCCTAAAGAAGGAAAGAATCCTGCTCAATCAGGCACTCCCTCCTCCccacttccccccctccccctcacacatGTCGTACTCCccagccccctctccccttccggCCATGGGCCTGGGGCTTGGGCGGGCCGACGGGGCCTGGGGCCCCCAGAGAGATGCAGGGAACAGAGACGTGGACACACTGGTGATCAAAGTGCTGGAGATACAAGAGTGCAGACAGAAGATCCACCAGCTGCAGGAGGACCTGAATTGGGAGAGGGCCAACTTTGAGTCTCTGCAGGTCTCCCTCCCGCCCAGCTTGAGTAATGGCCTGGATCCCAGTTCGTCAGAACAAGTCAACAAGTTCCAGAACCGCATACAACAGCTCGAGGAGAATGTTGGTGAGCTGATCAACAACACAGCCATCTTAGAACACAACTCGTCCACCAAGAGCACATGCGCCACCTTCAGGAATATGtccataaaaaaaattaagcggGCAGACAGGAAGGGATCGGAGTCGGTGACAGAGGAGAAGTTTGCCCTTCTCTTCTCCAGCGAGATCAACATCACGGGGTGTGACACGCCCTATTGCATACAGATGATAACGCTACCCATCGTTGTGATCGTTCACGGTAGTCAAGACAACAACGCCCTGGCCACAATCATATGGGACTGTGCCTTCTCTGAACCTGACCGGGTGCCGTTCGTGGTTCCGGAGCGCGTGCCCTGGAAGCAGATGTGTTTGACTCTGGACAGTAAGTTCCGGTCGGAGGTGCAGACACAGCGCAGCTTGGATCCCTACAACAAGCACTTCCTCGCCCAGAAGATCTTTGCCAAGCCCGACATCTCCGGAGACTTCAGCAACATGTTGGTGTCCTGGGCCCAGTTTAATAAGGAAGTGTTGCCGGGGCGAGCGTTCACCTTCTGGCAGTGGTTTGAGGGTGTGATGGAGCTCACCAAGAAATACCTGAAGAGCTACTGGAGTGATGGgCTGATTTTTGGCTTCATTGGGAAGGAGCAGCTACACCTTATCCTGCAGGACCGTCCGGACGGTACCTTCCTGCTGCGCTTCAGCGACTCTGAGATTGGAGGGATCACCATTGCCTATGTAGCCTCCTCTgaaaATAGGTGCAGGAAAATACAGAACATTCAGCCCTTCACCAAAAAGGACCTGGAAATCCGTTGCCTGGGTGACCGCATCCGAGACATCGAGTTCATCACACATGTGTACCCAGACTTGCCTAAAAATGACGAGTTCAAGAAATATTACACAGATGACCATGTGGCTCAAAACAGCGGCTACATTCCCGTCTCCATTCAGACTAAAGTCAGAGCTGGGGAGACCTCATCCCCCCCTCTTTCAACGGTGGAGACCCCACAGgatcccccacctccccaaaaCCGAGTCACTTTTCCTATAGGCCCTCTCTATCCAAATATGAACCCCCAGGGTAACGTGTTCTGTCCGAGCCCACAGTTCCAGTCCCAGTACCCTGCTGAAATGGAGGTCCCGAACTTGCCATTCCCAGACGTACTCAACATTGGCCCCTTCCCAAACATGGCACTGAGTAACCCTTCCGATGTGGATGACATGGAGCTGGAAGATATTCTGGGCACAGAAATGTATGAAATGCCACAGTGA

Transcript

AAFF_T00010820

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	STAT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF02864	STAT_bind	STAT protein, DNA binding domain	Domain	Interproscan
PF02865	STAT_int	STAT protein, protein interaction domain	Domain	Interproscan
PF21354	STAT_linker	Signal transducer and activator of transcription, linker domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR012345	Homologous_superfamily	STAT transcription factor, DNA-binding, N-terminal	Interproscan
IPR013799	Domain	STAT transcription factor, protein interaction	Interproscan
IPR013801	Domain	STAT transcription factor, DNA-binding	Interproscan
IPR036535	Homologous_superfamily	STAT transcription factor, N-terminal domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR048988	Domain	Signal transducer and activator of transcription, linker domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-