Gene detail

Detailed information of KAJ8396590.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8396590.1	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	AAFF_1.1_unplaced_105	1690638	1776269	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00016560

ctggtggctGGACTGTGTTTCCCTGGCTGTCAGTAGACCCTGCCCCTCGTTTTATCATTCCATTGACGTGTTGTTAGCAAATGGTAGCAGAAGGACTGATCTCTCGCCTGAAGAGGTCATTCTTTGGCTTTGGCTGCCACTTGTTGCTGAAACCTTTACCAAGCTCCCCTACATTCGCCgcgaattaattaattaagaaacatAATCAATTCGTTTCCTCGTGATCGAGAGGCACTTCTCAATGTTTGAACAGGAGCACGCCCACCTATAACACTTTAAAAAGGGATTACTACTGAACAAGTTTTACTACTATCTCGTCACAACCCGAGGGTGAAGCATGGTTGATAACACCAGTGTTGCGACAAAATCTGCTCTGCAAACGGCGTTCTCCTCCGCGAACAGCCTTCCCTTATTGGTGTCTACAGCCTCTACCCACCACCACTTCTCCGGCTCACAGTCCCATCCGCCCAGCGGCGGCATGAAGTTGGAGGCGGTCATGGAAAACCTCCAGCGACAACAGGCTGCGCGCCTGGCTCTCGAGGAGAAACTCCGGCAtgcacagaaagagaaagaggtcAGATCCATAGTGGAGTCACAGATCCAACAGCAAGCCATGGCCTTCCGTCAATATCAGGCTGCAGTCAGAGGCTCATTCGCAGCGGGGGTGCCCCAGCCGCGTTCGGGGACAAACTCGGCTCTCATTCATCAACACGCCGCGCCCAAACACACTGAGTCCGCGCCTGACTCCGACGTGGACGATGAACTAGAACATGATCGCGGCTTGGAAGATGAGGATCAGGATCTCGAGGAAGATGACCTGGGAGATGAAAGAGTCATGGACGAAGACCTGGACGAAGACTTGGCACACTTTACTCCACGCCATTCGCTCCAAACAGGAGATGGACACGATACCAAGGGGGTCGCCGTGAATATGCTTTCAAGAGTCGGCCATCCAGTGTATCCCGCGCCGAGGCAATCCGAGTCTCCCGAAGGAGTGGCAACACAAGTACAAGCACATCAGCATGAATGGACTTACGAGGAGCAGTTTAAACAGTTGTATGAGTTGGACGATGACGAAAAGCGGAAAGAGTTTCTTGATGAACTCTTCAGCTTCATGCAGAAAAGAGGGACTCCTGTGAATCGGATTCCTATCATGGCCAAGCAGGTGTTGGATCTGTACACTCTCTACAAGCTTGTGACAGAAAAAGGCGGCTTAGTGGAAGTCATCAATAAGAAGATATGGCGTGAGATCACCAAGGGTCTAAACCTCCCTACCTCTATCACTAGTGCAGCTTTCACTCTCCGAACACAGTATATGAAGTACCTCTACCCCTACGAGTGTGAGAAACGGGGGCTGAGTTCCCCGGGAGAGCTTCAGGCAGCTATTGACAGCAACCGGCGGGAGGGACGTAGGCAGAGCTATGGATCAGCCATGTTCAACTACTCTCCTGTCGGCACGCCAACCGTCCTCACCTCACCCAAGATCCACATGCCTCACATTGCCATGGCCACACCCAATGGCAGCCACATCTCACAGGCCTTCTCCATCAAGCAAGAAGAGCCCATGCTCTCTGGTGCCAGGCCCAGTCGGCTGGCCATCCCCATGCCACTCGCGGGCCACCACATGGCGGCGGCACAGGCGTCAGCCCTGGAGCAGCTGCGGGAGAAGCTGGAGTCGGGCGAGCCACCAGAAAAGAAGATGATGCTGATGGCCGAGGAGCAGCAGAGGATCATGCAGCATGCGCTCCAGCAGAACCTTTTCGCCATGGCAACCCAGCTGCCAATGAACATCAAGCTCAATAACAGAGATGACAGACAAGAGACCGCATTGAACCTGTCTACCAGCTGCATTAGCAGCATCAACATGTCAATAGAAATAAATGGAGTTGTCTACACAGGGGTCCTTTTTGCCCGGAAGCAAGCCATTCCAGTCATGCCAGGAAACAATGGGATCAGCCTCATCAGCTCTCAGGGAAAATCCAGCCTGGGATTGCCAGCTCACGTCCAgccgtcctcctcttcctcctccttctcctcctcattCTCAGCCCACGGACATGCCTCTGGCAGCTCCTCCCCCTAAGCAGTCCATGAAAGTAAGAGAGAAAAAGACTTGCGCTGTTTtgaaggtgattttttttttttcatttctttttttcatacaGTTATTTACAAAGGCACAGCGGCTTCTGGAGGGAATAGGACAGAGAAAATGGATACTTTCTACAAAACAGAACTGTTAATTGATTGGTCTTTTTTCACTGACGTCGTTGTCTGAAACACCTGATGAGGGAATGGGAATGATCGCGAGAAAAGGCACAGGGAACCAGCCGAACCTTAGCAGATGGGTGTGGTTACATTTGAACTCCTGTAAAAAGCCATGGTTGACATGGTCTATTATTTCTTATTGATTACAACTGTAAGCATTGGTGTGTGTTTTATGCTACGTTCAGTATGGTTCTGATATCTGCCGACATTTTGTTTTGGTACAGACAGAAGGAAATGGCTATTCTCAGCTGATaccaaagaaaaacacacaaaaaatcttCATTAACCAGTCATATCGACTGGCTCAGTATGAACGCAGAGAGATTTTCTATTCAGTGCTGACAGCATAAATGTGCATCATTGACGGCGGCTGCTTTGTAGAAATCATTCCAGAgctcagactttttttttctctttctcttcaatATTAAAAGGCATCAATTAAAAGGTTAGCAAGCACTAATCAGACCACTATTCATGGCATTGGTTTGTGTTCGTTTTGTCATTGAAGATTTCTCTGTGACAAAACCCTAACTGGGGTAAACCAGCTTTACGTAAAACCAGGGCTGCTGTTGATGCACAGGTAACTgcagaaataaaggaaacaccaacataaagtgtcttaatagggcattgggcctccacaggccaccagaacagcttcagtgcacctttcTACAAGATTCTTGGAGGGatccaacaccattcttccatgagaaattccatcatttggtgttttgttgatggtggtggaaaacgcttgTCTCAGGTaccgcttcagaatctcccataattgttcagttgggttgagatctggtgactgagactgccatggcatatggtttaaattgatttcatgctcataaaaccattcagtaaccactcatgtcctgtggatgggggctttttcatcctggaagagaccactcgcatcaggatagaaatgcttcactataggatgaaggtgttcactcagaatggctttgtatttattgcagtttaccatgccctctaagggagtggacctaaaccatgccatgctagggaaatgcaccccacaccatagagccgccagaacccttcatttactccagtgtttcctttatttgggcactAATGGTTATTAGGATGTGATCATTGCAACAGTGCTACTGAAAATGATGGCGAGCTGTTCTTTATTTCAATGTCAGTCAGGCAGACCTGGTGAAACCTTGCTGAATAGCctcacactgacactgcttcacTGCCAGTTGTAGTAGTGTTGTAGTGCGATGCACAGCTGGTATCACAATGTAATCCCTTGGAAGAGTTCATTCAGCTTTTAATAAACATGAAAGGCTTTGCCTTCAACAAAGACAAGTAAGTAAATTCCATAGCATATACAGTACTTTAGCATCAACAGTAAAATTAACAAACATATCAAAGTGAATAACAATGTAAGCCACAAGCACCAGTTACAATGACATCCAAAATGGAGGTCATCAGTGAATTAGGCAGCTTGACCATAAGCAAGCACTTGAGCACTGGATCCAGATTGAGGTGGAATTACcgattaaaaaatgtgacctcTAGAAAGATTACTGTCATACATTACAAAGATGCAGTTGTTATATAGTGGCTTTATAGTGAACTGAATccagctttcttttttaaaacttgtatGCACTTGTATCCAAGACTTTAGAAGTTGTCattgttactttttttaattttagagtGATAATGGGAAAAGAGTTTgaagatttttattttgacttttttCCAATGAATTCTGTTGAACATATGgatttaattatgtatttattttgttattattctgGAATTTATAACCAAGAAATCAGCCACACAGACCTTTCTAATTTAAACCCATTTTTAACAAACCGTCAGATGCAGATACCTCACATATCTAGCAAGTCCATAAACATAGATTATTAACAAGAAAATATACCTCATTTTGtttctattgtttttattgtaaagccacttgaaaaacattttattcaacagatcactggatttttttcttcataatctTTTATATTGTTATACCAAAGAAGGGAATATTCTATGAAAGCACATCTACCTCATTTAATATAGACTGTGCCAACAAACCTGCTCATAATCTTAATTGCCAGTTTACATCTGTAGGTCCACATGTACTATTTGctggaacaaaatgtattaaaacgaAAACAAAAATAGTTGGACTATGTGAGACAAGAATTGAGCTGTTCATGTTTCACGTTTGTCTTGTGTattgttgataatggaaatgccaGAATGATTCTATTTTCTGTACAAATTATACTGTGTCAAGGTGTTTAAATGACATGTTCATATTAAATAGTTTAATAGCTTTCTTTATTGTATGTACAGGAAagatgttaagttatgaaatttCATATCTCAAGAGACCACTTCAATGGAACAGATTTCCTGGTGTTTTTCTTTGATTCATTATTGAAGGCGGTTGCCTTTTTGTCCTCAGTTTTTTGGGAAATGAGTTTCCACTAATCTAGTCGATACATGAAAAGTCCCCTGAACTTgttcaaatgtaatgtgtggGAAACTCTCAGGATATAATTTGTGACTTCCTGTGGACGGCCCTGTAAAAGGAAATACCATGGCAAAGTCAAATGTTCCTAATAGAaaatttgttttgtcattttaccaGATTTAGAGATGTAGGGAAATGACACATTGGGAGAGAGCTGATGTGTCATTTCATCTGAGAATTGAAAATCCTTTTCAGACATCTCTCTGTACCTCAGTGAGCTAAAGACTGTATATTCAGCTTGCTCATCTTATGACTATTGTGTTTGCAAGGAGCAAAACAGAGGTAAATTACCGAAGGACAgattacatatatttatatgtttagGGACAAAATAGGACACAAACAATGTGCACATTTTTACACTTATTGTTTTAACTGCCTTCTATGTACATATCAGAAAGGTATTAACTGTCTATCTCAGCAGTATctatacatactgtacaaacCAGACTGTTCCCTCTCACATAAAAGAGTGTCGGGGGTACTGTGAAAAGAACAGATTGGCAATAACTGGATAACCAAGATAAAAACAGTGTTGCTGACTGTAAAACATGATATTGCAGTAATAATTGTAACCAAAGATCAAAATACCACCAACAACgcatatatttgtaaaaaacaaaaaagaataagAAAATATAGCACatcattttcagaaaataaatattcatttatGTCTCAATAGTATGTTGTTTACTTTGTTTAAAGTTTTTATCTATGCTATGCTGGTAGACTTTAGATACTATGATGGCTTTACATGCTGTTTATGAAGCTTcaatttcttattttgttttcccttttGTTAATTTTGGATAAATCCAGTGCATTATGGGATAGCTGGATTGTGGTGCTCAGGGGTTACATCTTAAACATacaaaagagatgaaagtgaaagagatgttttttgtttttgccatttGACTTGTAGCTCATGTAGAAATAAAATGCTGCTTTTAAGTGAATCAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606	Domain	ARID DNA-binding domain	Interproscan
IPR023334	Domain	REKLES domain	Interproscan
IPR036431	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR045147	Family	AT-rich interactive domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15348	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-