Gene detail

Detailed information of KAJ8396052.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8396052.1	INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS	AAFF_1.1_unplaced_110	2289085	2308223	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00025840

ATGGGTTCAATTGAAGATACATTGCTAAAAGCCAAACTGCTTCAGCTTGAGTGCCACTTCACTTGGGGCTTGGACAAAAATGACACTGACTTTAATGATCTACAGACCAGACTTAAAACCCGAATTGAGATGGAAGTGCGAGCAGACTGGAAGATCGGGGCATTCCATCTTTTGGCTTTCACAAAATACCTGCAAGGTCTCCTTGAGGAAGCACGGGAAGACTTGGAGAAGGCTGAGGAGCACATCAGGAAGTATGAAAACTGTGAGAAGCGACTTATGGTCACTTATGGCAATTTTGCATGGGTATACTATTACATGGGCGAGCATGCGCAATCCCAGACCTACCTGGAAAAGCTGGACGAGGTGAAGATGAGGTTTCCCACAGAACCCCCTTCTGCCATCCACCCCGTAGTCTATGGGGAGAAAGCCAGTACATTCCTGACATTCGCTCTCAAATACCATGAGAAAGGGATAGAGTGCTACAAGAAGGCCCTAGAGGTGGAGCCACAGGAGATTGAGTGGAATACTGGCTACGCTATTGCACTGTATCGCACTGAGACCACGCTGACAAGCCTGGAGGAGTCGCCAGCGAGCAAGCAGTTGAGACGCGCCTTAGAGCTTGACCCGAACAACGCACACATGATGGTTCTGCTGGGCCTGAAACACGCTGTCTATAAGGAGTATCAGAAagcggaggagctggtggaGAGGGCCCTGGAGTTGGAGCCGGACAACCCCTATGTGACACGATACGTGGCAAAGTTCTTTCGGCAGCAAGGATCCGTGGAGAAGTCCATACGTCTTCTGAACAGAGCACTGGAAAGAACACCTAATTCAAGCTTTCTGCACCATCAACTTGCGCTCAATTACAAGAGTAAAAGGGGCCTGGGGCCTTGGTCGTTCAGTGCATATGGAAGCAACGGAGCGGAGGTCAGAGAGCTGCTCAGCCTGAGCATCCATCACCTGGAGGAAGCCATCTCCCTGAAACCCTCCTTCATTTATGCCATGGCGGAGTTAGGACTCTCTTACGCAGAGGGGGGAGACATACAAAAAGCAGAGGAGATGTTTCAGAAGACATTCAAAGTTGCTACTGCTAAAAATGAGAGCCTTCAGGTGGTGAACTTCCATTATGCAGTGTTCCAGCAGTACCACAACAGATCAGAGCCCCTGGCTATCAGGCACTACAAGgaGCAAAGGTTCCTGGTCTCCATGGAGAAGGTCGGCAAGGTGTGGAGCAACCTGCGGAGGGGATGCCACACCCTTTTCCGCCCAGAAGGTGTGGCCCACAGCGAGGGCAGCCCAGAGGTCGAGGTGGACCAGGCTGGTGGGGGTAGGGCGTGTGAAACAGACGGCCCTGCCCCCGACCCGCCAGCACCCCGCCTATCGGAGGCGGAGCTGAGGGGCATGGGAGCCGGGTGGCACGGGCACAACTGCGTGCTGGAGCCCCCCCAGGCGATGGAGATGGCAGTGGACAGGGACGGTGATGCGGACGTGTGTGGGACCGGCGTACCCCCGCTGGCCCGGAGGGACTCGTACTCACGCCACGCCCCCTGTGGGGGCAGGAAGAAGCACGGGTCCTGCTCCAACCAGGCGCAGGGTCCGCTGGAGGCGGGTGGGAGACGGAGCCGGGCgcggggggcggggctgacacGCCCGAGTCCGCGGACCCTGGGCCGGCGGCTGCAGGACACGGTGGGGCTGTGCCTCCCCCTGcggccccggccccgcccctccAAGGTGCCCCTCGCCTCCTCCAAGCGCAAGATCCACCTGACCGAGCTGATGCTGGAGACCTGCCCCTTTCCCCCGGGCTCGGACCTGGCCCGCAAGTGGCACCTGATCAAGCGCCACACGGCGCCCGTCTGCCCGccgtcctcgtcctcctcctcctctccgtcCGCCGCCGTGCTGCTGCTGGACGCCCAGCCGTCCCCCGACGACGACGAGGAGCACCTGCGGGAGCGCCGGAGGCTGAGCATCGAGGAGGGCGTCGACGCCCCGCCCGACGCCCAGATCCACAGCGCCGAGGCGCCCGCGCTCCCCGGCTCCCTCTACAAGCTGGGACCAAACACGGCGGGCGAGGGAGCGAGGCCGGGGTCCAgggagggcagggggagggggagggtcgCGGGCGCAGGAACGGCCTCGGCCCCGCCGGCGGACTGCGACTCGGACTCGGACTccaccacgctctgcctgcagGCGCGGCGCCCCAAGCAGCGGCACGCGTCCGGGAGGGCCCGCCCCCGGGGGCCGGCGTGGGCGTGGGCGTGGCCGGACGGGGCCCCTGGAAGGTCCACACGCAGATCGACTACATCCACTGCCTGGTGCCCGACCTGCTGGAGATCACGGGCCTGCCCTGCTTCCGCCGCTACGGCCGCTCCCTGCACGCGCGCGTCGAGCAGTGGAACCACAACTTCAGCTTCGACGCGCGCGACCTGCGTGTTCCACGCGTCCACCGTGACGGGCCTGCTGGAGCACTACAAGGACCCGGGCGCGTGCATGTTCTTCGAGCCGCTGCTCACGGCGCCGCTGCACCGCGCCCTGCCCTTCAGCCTGCAGCGCCTGGCCCGCGCCGCCGTCTGCCGACGCACCTCCTACGACGCCATCGGCGCCGTCCCGCTGCCCGCCTCACTGCGCGACTTCCTGCGCGAGTACCACTACAAGCAGAAGGTGCGCGTGCGCTGGCTGGAGCGAGAGtga

Transcript

AAFF_T00025840

GGTAAATGAAAAACACCGTGACTTTCGTGTTTACATCAATCGTCTTGGCGATCTGCCATGGCACTGCACCACCCGGCCCAAATACATCTGGGAGGAGACTGTAGCGACTTTATATGAAGCACTGAGGCTGATCGGGCTATTATAATCCTGGAGGCTGAACATTGACCTGTTTGCAAGACCTAGGTGAAGGTGAAATGGGTTCAATTGAAGATACATTGCTAAAAGCCAAACTGCTTCAGCTTGAGTGCCACTTCACTTGGGGCTTGGACAAAAATGACACTGACTTTAATGATCTACAGACCAGACTTAAAACCCGAATTGAGATGGAAGTGCGAGCAGACTGGAAGATCGGGGCATTCCATCTTTTGGCTTTCACAAAATACCTGCAAGGTCTCCTTGAGGAAGCACGGGAAGACTTGGAGAAGGCTGAGGAGCACATCAGGAAGTATGAAAACTGTGAGAAGCGACTTATGGTCACTTATGGCAATTTTGCATGGGTATACTATTACATGGGCGAGCATGCGCAATCCCAGACCTACCTGGAAAAGCTGGACGAGGTGAAGATGAGGTTTCCCACAGAACCCCCTTCTGCCATCCACCCCGTAGTCTATGGGGAGAAAGCCAGTACATTCCTGACATTCGCTCTCAAATACCATGAGAAAGGGATAGAGTGCTACAAGAAGGCCCTAGAGGTGGAGCCACAGGAGATTGAGTGGAATACTGGCTACGCTATTGCACTGTATCGCACTGAGACCACGCTGACAAGCCTGGAGGAGTCGCCAGCGAGCAAGCAGTTGAGACGCGCCTTAGAGCTTGACCCGAACAACGCACACATGATGGTTCTGCTGGGCCTGAAACACGCTGTCTATAAGGAGTATCAGAAagcggaggagctggtggaGAGGGCCCTGGAGTTGGAGCCGGACAACCCCTATGTGACACGATACGTGGCAAAGTTCTTTCGGCAGCAAGGATCCGTGGAGAAGTCCATACGTCTTCTGAACAGAGCACTGGAAAGAACACCTAATTCAAGCTTTCTGCACCATCAACTTGCGCTCAATTACAAGAGTAAAAGGGGCCTGGGGCCTTGGTCGTTCAGTGCATATGGAAGCAACGGAGCGGAGGTCAGAGAGCTGCTCAGCCTGAGCATCCATCACCTGGAGGAAGCCATCTCCCTGAAACCCTCCTTCATTTATGCCATGGCGGAGTTAGGACTCTCTTACGCAGAGGGGGGAGACATACAAAAAGCAGAGGAGATGTTTCAGAAGACATTCAAAGTTGCTACTGCTAAAAATGAGAGCCTTCAGGTGGTGAACTTCCATTATGCAGTGTTCCAGCAGTACCACAACAGATCAGAGCCCCTGGCTATCAGGCACTACAAGgaGCAAAGGTTCCTGGTCTCCATGGAGAAGGTCGGCAAGGTGTGGAGCAACCTGCGGAGGGGATGCCACACCCTTTTCCGCCCAGAAGGTGTGGCCCACAGCGAGGGCAGCCCAGAGGTCGAGGTGGACCAGGCTGGTGGGGGTAGGGCGTGTGAAACAGACGGCCCTGCCCCCGACCCGCCAGCACCCCGCCTATCGGAGGCGGAGCTGAGGGGCATGGGAGCCGGGTGGCACGGGCACAACTGCGTGCTGGAGCCCCCCCAGGCGATGGAGATGGCAGTGGACAGGGACGGTGATGCGGACGTGTGTGGGACCGGCGTACCCCCGCTGGCCCGGAGGGACTCGTACTCACGCCACGCCCCCTGTGGGGGCAGGAAGAAGCACGGGTCCTGCTCCAACCAGGCGCAGGGTCCGCTGGAGGCGGGTGGGAGACGGAGCCGGGCgcggggggcggggctgacacGCCCGAGTCCGCGGACCCTGGGCCGGCGGCTGCAGGACACGGTGGGGCTGTGCCTCCCCCTGcggccccggccccgcccctccAAGGTGCCCCTCGCCTCCTCCAAGCGCAAGATCCACCTGACCGAGCTGATGCTGGAGACCTGCCCCTTTCCCCCGGGCTCGGACCTGGCCCGCAAGTGGCACCTGATCAAGCGCCACACGGCGCCCGTCTGCCCGccgtcctcgtcctcctcctcctctccgtcCGCCGCCGTGCTGCTGCTGGACGCCCAGCCGTCCCCCGACGACGACGAGGAGCACCTGCGGGAGCGCCGGAGGCTGAGCATCGAGGAGGGCGTCGACGCCCCGCCCGACGCCCAGATCCACAGCGCCGAGGCGCCCGCGCTCCCCGGCTCCCTCTACAAGCTGGGACCAAACACGGCGGGCGAGGGAGCGAGGCCGGGGTCCAgggagggcagggggagggggagggtcgCGGGCGCAGGAACGGCCTCGGCCCCGCCGGCGGACTGCGACTCGGACTCGGACTccaccacgctctgcctgcagGCGCGGCGCCCCAAGCAGCGGCACGCGTCCGGGAGGGCCCGCCCCCGGGGGCCGGCGTGGGCGTGGGCGTGGCCGGACGGGGCCCCTGGAAGGTCCACACGCAGATCGACTACATCCACTGCCTGGTGCCCGACCTGCTGGAGATCACGGGCCTGCCCTGCTTCCGCCGCTACGGCCGCTCCCTGCACGCGCGCGTCGAGCAGTGGAACCACAACTTCAGCTTCGACGCGCGCGACCTGCGTGTTCCACGCGTCCACCGTGACGGGCCTGCTGGAGCACTACAAGGACCCGGGCGCGTGCATGTTCTTCGAGCCGCTGCTCACGGCGCCGCTGCACCGCGCCCTGCCCTTCAGCCTGCAGCGCCTGGCCCGCGCCGCCGTCTGCCGACGCACCTCCTACGACGCCATCGGCGCCGTCCCGCTGCCCGCCTCACTGCGCGACTTCCTGCGCGAGTACCACTACAAGCAGAAGGTGCGCGTGCGCTGGCTGGAGCGAGAGtga

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|SOCS

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525	SOCS_box	SOCS box	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF14559	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496	Domain	SOCS box domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR036036	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10271	INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-