Gene detail

Detailed information of KAJ8396031.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8396031.1	CADHERIN-23	AAFF_1.1_unplaced_110	1609078	1773528	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00025630

Transcript

AAFF_T00025630

ATGCGACTGGGGTCATGTCTGTTCAAATGGCTGGGGATAGGGATTGGAATCCTTTCTTTAGTTGCCTACAGCTTGTCTCAAGATAACGCAGAAGACTGGCAATACGAGGAATGCAAGCTTTCCAGGACAGGTCCACCTGCCACCATTGTAGCGATTGATGAGGAAAGTCCCAATGGGACAGTCCTGGTCgaaaatatgcaaataaatgGAAGATCTCAAGACCCAGACCGAACCATTTCCTTGTCCTTGCGAGACAACCATGAACGCTGGGTTCTCTTGGAGCCGGTGGCGCAACGGTTATTCCTAAACAGCACTGGTCGAGTTCTTGACAGAGATCCTCCGTCCTACATCCATTCCATCGTGGTGCAGGTGCAGTGCACCAACGAGCTGGTCGGCACGGTCATTCTGCACGAGGTGCGGATAGTTGTGAGGGACCGCAATGACAACACCCCTCGGTTCCAGCAGCCCCGGTACTATGTAGCAATAAACGAGctgacCCCTGTTGGCACGACCATCTTCACCGGGTTCTCTGGAAATAATGGCGCCACTGACATAGACGATGGGCCGAATGGACAAATCGAGTACATCATTCAGTACAACCCGAGTGATCCGACATCAAATAGAACCTTCGACATCCCCCTCACTCTTGCCGGGTCTGTTGTGCTCAGGGAGAGACTCAACTACGAGGAAACCACCCGCTACCTGGTCATCATTCAAGCCAACGACCGCGCCCCTTATTCAAGGGACAGGCGCACCGCCACCACCACGCTAACGGTGGACGTGCTGGACGGGGACGATCTGGGACCAATGTTCCTGCCCTGCACGCTGGTGGGCAACACCCGAGACTGCAACCCTCTCACCTACAGGGCTGTCGTCCTGGAGCTCACAGAGCCAGGCAGAGTGAATCCCGTTAATGTCACTCCACCCATTCAAGCAGTTGATCAAGACCGAAATATCCAGCCTCCGTCGGACCGACCTGGCATTCTTTACTCCATCCTAGTTGGTAAACCAGAGACATATGCAGAATACTTCACACTGAATCGAACTACAGCAGAACTCCGCCTTCTGAAGCCGATCAACAGGGACATGTACAACAAATTTGACTTGGTAATCAAGGCAGAACAAGACAATGGACACCCACTGCCAGCCTTTGCTAGTTTGCACATCGAGGTTCTCGATGAGAATAATCAGGCCCCATACTTTATATTCTCTAAATACCAAGGATTCATCATTGAGTCTGCACCAGTGGGGACCACCATCTCAAGCAATTCCAATCTTACAGCACCCCTCAGGATCACTGCTTTGGATAACGACATTGAGGAGACAAAGGACCCCATGGTGCAAATATCTTTGGGCGACTATAACACCATCTTCACTGTGACACCATCGGGGATCACACGTCACCTGACCCTGCTGAAACCCGTCGACCGAGAAGTGCAACAGACCTACACCTTCACGATGATCGCATCTGACGGGGTCCAGGAGAGCACTCCGGTCACTGTTAATATTTCGGTGATTGATGCCAACGATAACACTCCAACCTTCCCCAACAACTCCTACAGTGTCAACGTTTACACAGACATGCAACCCGGGGAAACAGTATTACGGCTGACAGCCCTGGATGCGGATGAGGGTCCCAACGGAATGATAAGCTACGAGATCTTGGCCGGCGATCAGGGAGACTTCATCATCAATAACCGCACTGGCCTGATCGCCGTGGCGCCCGGAGTCAACCTGGCCGTGGGACGCTACTACGCCCTGACTGTCAAGGCCACGGATAACGCCCATGAGTCACAGAGGAGGGGCTCCATCACGACGGTGTACATCGAGGTCCTCCCACCCAACAACCAGAGCCCTCCTCGATTCCCCCTCTTCACGTACAGCCTGGAGGTCAGCGAAGCCATGCGAACGGGGGCTATCCTGCTCAACCTGCAGGCAACAGACCGTGAAAGTGATCCCATCACATATCACATCCAAAATGGAGATTCTGAAAACAACTTCAACCTCTCAGAAACTTCAGGGCTGTTGGTCTTGGGGAAGCCTCTGGACAGGGAGAACGTGGATCGCTACGTCCTGGTCATCACTGCCTCTGATGGCCGCTCAGACGGGATCTCTACGGCCACTGTGACGATAGTGGTCACTGATGTTAATGACAATGATCCTGTCTTTGACCCGTTTCTGCCCAAAAACCTCACTGTCCAAGAAGAGGAGGCTAATTCTTTTGTTGGTCAAGTAAAGGCCACTGATCCAGATGCAGGGGTTAATGGACAGGTGCAGTACAGGCTGGTGAACCACGTGGGGCTCTTCCGGATCAACGCCAACGGTAGCATCTTCACGGCCGTGCCCCTGGACCGGGAGACCAGGAGCGAGTACGACCTGGGAGTCGAGGCCTCGGACGGCGCCGTGGACCCCCGCCACACGGCCGTCACGCTGTCCGTCCAGGTGCTGGACATTGACGACAACAGCCCCGTCTTCGCCCAGGCCTCCTACGCCGTCAGTCTGCCGGAGAACAGCCCTGAAGGCACGGTCATCCTGCAGCTCAGCGCCAAAGATGCCGACCTTGACTCCAACATCACCTACCGCATCAGTACGGAGGAGGCCAGACAGCTGTTCTCTGTCCATCCTGTTACTGGGCAGCTGTCGGTGCTGGAGACGCTGGATTTCGAAAACCTCTCTGCTTCTGGAGCAACTTATACCTTTGTGGTGGAGGCCTTGGGTGCTGGTGGGAACATGCCCCCAGGGATGGCTACTGTCACAGTCAAAATCACAGATATGAACGATTACTCCCCGGTGTTCAGCAAGGCTCTGTACAGGGGAATGGTGGCGCCCGATGCCGTCAAGGGTACCGTCATCACTACGTTGTTCGCCGAGGACCAGGACCCCGCGGACACCCCGGCCAGTCACGTCCGGTATAGGGTGGATCCAGACCAGTTCCCCTACAGCGGCAGCATTTTTGACGTGGAAGAAGAATCCGGCAATGTCATCGCCAGGGTCAATCTAAACGAGCAGCCCAGCACAACGTTCAGGCTTTTTGTCATTGCATATGATGACGGAGACCCAGTGAAGCTCAACAGGACCCTTGTGGAAATCACTGTTCTTCAACCTTCTATAATCCCTGTCTTCACCCAAGAAGAATACAGGTTTCCCCCTGTGAGTGAGTACGCCAAGGTGGGAAATGTTGTGGGAGCCATAATGGCCGCTGCTGTAAACCAGACTATAGTGTACTCCATTGTGGATGGGAACGAAGGCAGGGTATTTTCAGTGAACAACAGCACGGGGGTCATCTCCACGGCCGGCCGGTTAGACTACGAGGCCATCAGCCACTACACTCTCCGTGTACAAGCGGACTCCTTGAGCGTGGTGGTGTCCAATCAACGGGTGACTTCAAAAACCAACACAGCCAAAGTGTATATTGATGTTCGGGATGAAAATGATCATCCTCCCATTTTCACCAAAAAACTCTACCTGGGAGGGGTGACCGAGGATGCCAAGACATTCACCTCTGTGCTCCATGTCCAGGCCTTGGACAAGGACACTGGGAATTACAGTGCAATGCAATACAGACTGATCATTCCTCCTATGGCCGATGGCAAGGATGGCTTTGTTGTAGAGCCATACACGGGCATCATTAAAACTGCAATCATGTACAGGAACAGGCGCAGGACCTACTTCAAATTTGAAGTCACCGCGACTGATAACTATGGGAAGGGTTTGAGCAGCAGCGCACAGGTGGTGGTCTCTGTGGTCAATCAGCTGGACATGCAAGTAGTGGTGTCCAACGTGTCGCCCACTGTTGTGGAGCAGAACAAAGACCGGCTCGTTGGGATTTTGGAGCGCTACGTTCAGGACCAGATTCCAGGCGCCAAAGTGGTGGTGGAGTCCATCGGGCCGCGGCGGTTCGGAGACGGGTTCGAGCAGGAGGATTACTCCAAATCGGACCTGATGGTGTACGCCATCGACCCCCTGACCAACAGGGCCATATCACGGCAGGAGCTTTTTAAGTTCCTGGATGGAAAGCTACTGGACATCAACAAGGAGTTCCAGCCCTACCTGGGCCGAGGCGGACGCATCCTGGAGATCCGCACCCCCGACATCGTGGCCAGCGTGAAAAAGGCGGCGCAGGCGATGGGCTACACAGAGGGGGCGCTGTTGGCCCttgccatcatcatcatcctctgCTGCGTTCCTGCCATCCTTATCGTCATGGTGACGTACAAACAGCGACAGTCCGAATGCGCCAAAACCGCCAGGATCCAAATGGCACTGCCAGCGGGCAAAACTGCCGGGGGTGCCGCCAACAACCTCTACGAAGAACTTGGGGACAGCTCCAtGCGAGGCTACGGACATCAAGAGCAACAGCAATTGCTAAGACCATCTCTTCTGAGACCAGAGGAGCTCTCCATGGAGTCAGGCATCGACCCAGGGCAGGAGTACTACACACAGGATTACTATAACTATGACCACGGATATGAGCTTCCTCAGTACGGCAGTCGCAGGAAGTTGATTTCTCCCTCAGGCATGTACGATGAGTATGGAGAGGTGATTGTGGAGGACGATGGGAGCTATTACTACAGCCCACACGGGTCAGAAGGAGAGTACGGGAGAAAGAAAAGGATCAAGCTGGTGGTGGATCGGGAGTATGAAACCAGCTCGACCGGGAGGACAGTGCCCCTGAGTCTCAAAGGAACCGCCTGTCCCACATCAACAGCCACAGCAACATCAACGGGAACATCTACCTCGCACAGAACGGGTCCATCATCCGGACCAGGCGAGCGGGACACCCCAACAACATAAAAGTGAACTCCCCCACACGCCTGGGGAAGCACTTCAAAAAGCTGGACAAGCTGGCGGTGACTCATGAGGAGAGGCTCCCCCTCAACAGCCCTGTGGCCGCTGGCGTCTCCTCCTCCGTCGACGACGAGAACCTCAACACCAGGCCCTCCTGCGGCTCCCTGGCATCCAGCACCACGGGCCGCGAGAGCCTGAGGTCCAAGTCCAACATCGCAAAAGCCAGGAACGACAGGGCGTGCGGCGGGGACGAGCAGGAGTCCGCGGTCGACAACGAGGACATGAAGGAGCCTTTAGAGTCTCCCAGCGACCACACTCAGTCCGACGAGGAAGAGCTGTGGATGGGACCCTGGAACAACCTGCACATACCAATGACAAAACTGTGACATTTgtaagcttcttttttttgtttgttttgttttccaatataaagaaatgtactttttattgTCTTTATTGAAGAGTAAAATGTTCATATTGTGCACCTATGTTGTACATGGGAATTACACAATTCACTGTGtaagaaaatgtatgaaattgcaCTTGCATTCagtattatttatatttggtTTATTACCGCTATTTGATGAGATTGCTTTGATGAAATAAGGTATCTTAAAATGTcgtgctcattaaaccatttgATCGAAGGCATCATGCAACAAATTGGCTCGCATACCTTTTGGTATTCTGTAACTTCCAATTGTTAAAATCTGACAAAGAATTTAAGAGCTTGGTAGctgatgtttttacatttaagtgTTGACAACAGCATGACTGACCTTGCAAAAAGTGAAGTTTAAGGTTCACGCTCCTTCAGAAGTGTTTTTGAAACCCCCTCCATTGTGTGGGATGAATGCAAACAGCCCTGTGACAGACGTGGAGTATACTTGTTTATCCAGCTACTTTCCACTACGGAAAGTGGGATTAGCTCTTACCCAATGAGCCATCCAATCTCAAACACACTGTTGACGAtcatcatatttttttacattaatcaCCAAAACTCTGAAGTTACATTTGAATACTGTCACATTTGCTGCATACATCTTTGCTATGTTTGTCAATATTTTGGCAATGGTCTGTTTTATAATTGATATTTGTAATTACAGTGTGATATTTTAagcacatgaaaatgcaatgcagTATCCTCTGTTATTAGAACAATGACATTTGATTGCTCATACACCCGCATCTCAAAccagaaaataaaaccaaatacTTGGTCCCAAAAGAAATTCTCCTCATGCATCAAGCTTACGTGAGTATTATTAAGCCAatcccctcttccctcccccccaaaagtCTGTTTGAGCTTGAAAATTATGAAAGGgtacaattatttgattgaaaACTACTAGACCTTTCTGAAGTATGTATGTTCAGTTTTAATTCTGTGaaccaaattaaaatgtaattttgtgttaACTAGACTTGGAGCTGCACTACATAAAAATagccacaggggggagatctgAGTTTGTGTTGTGAATATACAAGTGCCTAGGGGACTGCACAACCGCTAGCTAAAATGACTAGGCTTTTATTGTATGCTGTAATGGAACCTTTGGGTACATTAGAGAGTTTAATCATCGTGTGAATGCTGggaattaattatttttggaGCAAGTGACCCATGTCAGAGGAGAAGGGTAACATTGTGTCTTCCAACTGATTTCCTTTGTGGTTTCATAGGAGTTAAGAGGACTCACAGGGAAGGCCTACTGCTTGGCCCTCTGGCTTTCAAAGGCTGACCAGCAGCTGACCTGCAGTCTGCTAAGTGGAGAAGTCATGAAGTGTTATTATGAGCATCATTTAATGCCCTTTGTTGCACGTACAGCGGAGGTATTGCTGGTCAGGTCTTGAGGGTAAGTTTAATTCTACAGATGTGAAATGGAACCCAGGCCATCATGCTGTCACCCCACATGCTTACTGGTTTAAATGGTGTCTgtggtgtttttatttacaGAGGCCTCTCTAGGCTACAGTCAAATTGCGAGTCTGCTCATTTGTTTCTTGAAGATTAATTTATCAGGCAGCAGCCCTGCTGATTTACCTAAATCAGCAAATTATTGCAATTCCCATGCTCAAATTGATCCGCGAAGCTTTATTAGCCCTGCCAGCTAGAGGATACTGGCATCCTCATTACTCTCCCTCAGGTCAGAGAGGAGTGATATGCTATGGGAAGCTTGGTGTGGAAATCTGTCTTTGGAATTTGTCTGAATTTGAAACTATTTGTCACACAAGTATGGTGTTAGCGATGTGATGACTTTTTGTACAGTTGATTTTGCTCTTTAATTTTCCTTGATGAAAGTGATAGTAAACATCATAAATGTACAGAAAGAATTCTTTCTTATAGATGACATGTATTCTTGGAAAATGCAaactgctttttttaaatgtaattccaAACTACAGATAACATTCATGTGGGACACTACACATCATGTGACTTATGTGTTTACATTACAGCTTTCAGTTTTAAATGAGTGTATAATTGTGCACCTTTTGatacatatttgacatttttaattctTAGATATGTCTTGGGCTTATCTTGGTCTCACAGTTTACCAGTGATGGGGCTTAGATGGTGACAGCGGGCTATTTTACCACCATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF18432	ECD	Extracellular Cadherin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR030718	Homologous_superfamily	Extracellular cadherin domain superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan
IPR041149	Domain	Extracellular cadherin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0007605	Biological Process	sensory perception of sound	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0032420	Cellular Component	stereocilium	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0048839	Biological Process	inner ear development	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-