Gene detail

Detailed information of KAJ8395296.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8395296.1	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	AAFF_1.1_unplaced_118	3066855	3080197	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00034980

GCAGTGTCACTTCCCAAGCACAAACTGAGCGCTCAGATTGTACAACATGGCCGCAGTCTGTGCTGCTTCTCGTGTTTTCACGAAAAGGGTGCTATCATCTAAAGCTCTTCCAGCAGTTTGCCCAGGGAGCTCCAGGAATTTCCACTTTTCCATCTATGGGAAAAAGCAAGATGCAAAAGTCTCAGATGATATCTCAACACACTACCCAGTGGTAGACCATGAATTTGACGCAGTGGTGGTGGGTGCCGGGGGGGCTGGACTGCGTGCTGCCTTCGGGTTGTCAGAAGCTGGCTTCAACACTGCTTGTGTCACCAAGCTGTTTCCTACCAGGTCTCACACAGTGGCAGCACAGGGTGGAATCAATGCAGCCCTTGGCAACATGGAGAATGATGATTGGAGATGGCACTTCTATGACACAGTGAAAGGATCTGATTGGCTGGGAGACCAGGATGCAATCCACTACATGACAGAGCAAGCACCAGCGGCTGTGGTGGAGCTGGAGAACTTTGGCATGCCCTTCAGCCGCACAGAGGATGGGAAGATCTACCAGCGTGCTTTTGGAGGCCAGAGCCTGAAGTTCGGGAAGGGTGGCCAGGCACACAGGTGCTGCTGTGTAGCTGACAGGACCGGCCACTCTCTCCTACACACCCTCTATGGCCGGTCCTTGAGGTATGACACCAGCTACTTTGTGGAGTACTTTGCCCTCGACCTGCTGATGGAGGATGGTGAATGCAGAGGCGTGATTGCACTGTGCATGGAGGACGGCTCCATCCACCGCTTCAGAGCCAAGAACACAGTCATTGCCACAGGGGGCTATGGCCGGCTTCCATGCCAGGACTTGGAGTTTGTTCAGTTCCACCCCACAGGTATCTATGGAGCCGGCTGTCTGATCACAGAGGGTTGCCGCGGAGAGGGAGGAATCCTCATCAACAGCGAGGGTGAGAGGTTCATGGAGCGCTATGCCCCCAATGCCAAGGACCTGGCCTCCAGAGACGTGGTGTCCCGGTCCATGACCATCGAGATCCGAGAGGGAAGGGGTGTCGGCCCAGACAAGGACCACGTGTACCTGCAGCTGCACCACCTGCCCCCTCAGCAGCTGGCCACCCGCCTGCCCGGCATCTCCGAGACCGCCATGATCTTCGCCGGCGTCGACGTCACCAAAGAGCCCATCCCCGTGCTTCCTACTGTCCACTACAACATGGGTGGAATCCCCACCAACTACAAGGGCCAGGCCATCACCTACAAGGACGGTGAAGACAAGGTGGTGCCCGGGCTATATGCCTGCGGAGAAGCAGGCTGTGCCTCCGTCCACGGGGCCAACCGGCTTGGCGCCAACTCCTTGCTGGATCTGGTGGTGTTTGGCCGCGCCTGTGCCCTCACCATCGCTGATGTCTGCAAACCTGGAGAGAAGCTGTCACCCTTGAGGGCCAACGCTGGAGAGGAGTCTGTGGCCAACCTGGACAAACTGAGATATGCTAATGGAAACATAAGAACTTCTGAAATCAGACTGAACATGCAGAAGACTATGCAGACCCACGCCGCCGTGTTCCGTACTGGCTCTGTACTGAAAGAGGGCTGTATCAAAATGGACGCCATCTACCAGACCTTGAATGACATCAAGACCTTCGACAGAGGTATTGTGTGGAACACTGACCTGGTAGAGACCCTGGAGCTCCAGAATCTGATGCTTAACGCCGTCCAAACCATCACCGGTGCGGAGGCCCGCAAGGAGAGCAGGGGCGCCCATGCCAGGGAGGACTTCAAGGATCGCATGGATGAGCTTGATTACGCCAAGCCCCTGCAGGGACAGCAGAAGAAGCCCTTCGAGGAGCACTGGAGGAAGCACACACTGTCATACGTGGATACGAAGACTGGCGAGgTGACTCTGGAATACAgaccagtgattgacagctcattgtctGAAGAAGATTGCTCACATATCCCTCCTGCCATCCGCTCCTACTAAGCACTTTTATAACCGTTATTTATAAACCAACTCCGCTTTTTAGTTATTTCAATAAAACTGGTTTAATGTGTGATTTTCATGCAGTACACGGAAGTACTGCATGTGGAATATTTGgtgtttaataaataaactgtacTGTAACTTCAGCGAATATTGCAAACAGCGTGGTTCATGTATATTATAGTTTTCCATACATTTGCTATAGTTATTTCaggcaaataaatgaatatttaatatttaaatatggaaTGATTCTGTAAAACAAGACATGTAAAGAGAGCAGACAGTTTAAATAGTAAAAACACACCACCAGTAAacatatagtttatatatacTGTTTTCACTTGTTCTTCATTCTCGGTGGCCTTCTTATTCTGACAAGCAAATTAtcacatgtatgtatatttctgtACAGCTTTCATGTGTCATGCTTGCCATATTTATTGCCAAGTTCAATAAAATTGCTCCAGTTACACAGTAGTGGCTGTGAACGGTGTGTACCTCCAATGTAATGCACCAGTACAGTCCTACTTCTCCATACTCCTCTTACTAATCTCTACCTCTGAGTTGAGAGCATTGCCATCCCCATTATGAGTTTGCTCCTCTTCAAGGAGTAACATCTACTGGGCACAGTCAGCTGTGTGCAGTCAGGGTGCAACCGCATTTATAACTGTGTTAAAAGCTTAACAATAGATCTTGCACCATCTGATTAATGCACAGCTTTGCTGGTCTTTTGCTGGCCACCTCTccaactgcagtgtgtgtgatagtTTGTTTGTATGGTTTCAATCACGCATATCATGACTATGTACCAGTACAATAAAATTGGTACATGGCTATGTATGTTGGTCTTGCGTATTGTTCCAATTTATGTTGTAAATACTTAAAGGGCCAGAACATGAGAGCTTAATTTTGAACAAATGTAATTCCATCACTGGAAGTACAATGGTTTGTTATTGAATTTGAAGAAATTGTTTTGCATGAAATAAATATGGACATGTTTCCGTTTCTGTATTCCTTTAAATGGATTAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00890	FAD_binding_2	FAD binding domain	Family	Interproscan
PF02910	Succ_DH_flav_C	Fumarate reductase flavoprotein C-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003952	Binding_site	Fumarate reductase/succinate dehydrogenase, FAD-binding site	Interproscan
IPR003953	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR015939	Domain	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	Interproscan
IPR027477	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR030664	Family	FAD-dependent oxidoreductase SdhA/FrdA/AprA	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR037099	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000104	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0005749	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006121	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-