Gene detail

Detailed information of KAJ8394820.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8394820.1	TOLL-LIKE RECEPTOR 7-RELATED	AAFF_1.1_unplaced_122	1588565	1606144	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00041750

ATGAACGGTGCCATGAGAAAAGTGTCTTGCGTCTTTTCCATCCTCGTCCTACAAGAGACAAGCCCAGGAGGCACTGAGGTCtacaccttcaccttcacctgggGCTCGGGTGGGACTAGAGTCCCTTCGATCAGCGTCTCCCCATCCGCCGGCTCCTCATTCTTCCAGACAAGAGAGAACGGCTACACTCAAACGATAACTCTCACCAGTCATGCAACCCTGAACTACAAGATCACAAATCAGTACACAATTGgagtttccctccctccctcagccgCCACGCTGTACGTTGTAATCTTACAGGCCCCGAAGTGTGATCGTCAGTTTGCCAGCTCAGGTGGGGCCACAGTGCGGGTGCAGGAGAACTTGGCTCCTTCTTTCATCCTGTACGCAGTGAATCCAGAGGACTTTGGCCCCTTCCAGTACACCCTGTCCAGTAGCCCGCAAGCCCCTTTCACGATTGACAAGATAGGCATTGTGAGAAGCCCCTCTTCTGGTTTTATACTTGATGAAAGGAAATACATCCTGTCAATCACAGTGGAAGGGGGTGGGACATCCTGTAGTGGAACGCTGAATATAGAAGTCCTTCCTGTAGAGATCCCTGCAGTCACCTTTACGTTGGGGAACCAGACAGTGACAGCCACGGAGAACAGTGGGCCTTTTACCGCCGTCGCACGTGTTTCTGCCATTTCTAACATTGGAGCAGACGTCTATTACCTCATCAAATCTCCAAACTCTGCCGGACCACACCATTTCCAGATAAATCAACGGACCGGAATGATCCGAACCATTCACAATCTGGACTTGGAAGCCAGCCCTCTCTTGAATGTGACCCATCTGCTAGTGGTGGCCTACGATCCGCTCCACAAAGTCAGCGCCACGGCGACCGTCGCCGTCGCCGTGCTCGAACGGTACGGTCTGGCTTCTGTGAACTGTGTGGACGGGGACAGGACCAGCACCCGCCTCACCTACCACGTCGTCGCAGACAACAGGTCCATGGGAAAATTCCAAGTGTCCACCACAGGGGGCTTGCTGAAGGTAAATGGAACTTTGGACTTGGATTCAAGTGGGCCGAATTGCGAAGATTTTCGATACACGGCTCACGTTGTAGTGACGGATAATGGAGTGCCCCCTTTGACAACCACAGTTCCAGTGTATGTGACAGTGACGTTGGTGAACGAGTTTGACCCTGTCTTTACTTCCTGCGAACACTTGAGCGTCAGAGAGGATGCCGCACCTGGCACTACGATTGGTTCTGTGAGTGCCACGGACCGCGACTGCCCCCACACTGTTAGATACAGTGTTGTGGGCACCACCGGACAAAGCCCCATAAGGTTCTACGTCGGCCCCAGCTCAGgTCAGATCCATCTCTTGTCCCACCTTGACTTTGAGGAGCAGACATCCTATGGTCTGCAGATCGAGGCTGTCGACATCGACCAGGATTCTGCTCCTGAGCCCAAAAACCAGAGGACTGCAGTATGCACACTGATCGTCAATGTTGagAACGTGAACGACAACCCCCCTGTCTGCGACCCCCCGCACTACCGGGCCAGCATCCTCTCCACCCTGAGTGCTGCTGTAGAGATTCTGACTGTGGCGTGCTCTGATGCGGACAACCCCACCCAGGACCTCGTCTATTCAGTAGCGGGAGGAAACACTAACAACCGCTTCGCTATGAATGGAGACCGGCTGGTGTCGCGAGGAGCGTTCTCCTTCCAGACCCCCGGGGTGTTTGATCCCACGGTCTACGAGCTCTCGGTCCGGGTGGAGGACCGGGGCACGCCCGTGCTCTCCACCATTGCCACGGTCATTGTGAGCGTGGTTCCCTGGACGACCACTAGACCCACCACCACAACCACGGCCAGCCCCCCCCAGATTGAAGTGGTTGGACTGTTGGTTCAGGAGTGGACCCCCCCACTCTGGTTTGTGGCAGTGTTGACAGCCGCTGGAATCCTGCTGCTGCTGAGCCTAGCAGCGCTGCTCTGGAGATgCGTCTCAGGATGTAGACAGGCTCCAGTAACATGTCCACAGCTGCCGGATAGGGGCCAGAACGCAGAGCGAGAAACCCCAGCCTCAAAGCCTCTGCAGACGGACAGAGGGACCGCAGAGAAAGACCTGGTTCTGAACTGGGAGAGCTTGAAGAGTTTTGAAGTCAAACTTTTGTATTCTTTCCTGgataataaaaaacacatgGCTTCATTCACAAATGGAGTGTTTCTTCTCTGCATATATCTCTTGCTGGCAGCTGTGACGGCTATAAATCTTACATTCTTTCCCTGTGACATAATTTCGACAAAACTGGACTGCAGTCAGAGAAATTTCCTCCAAGTGCCCTCAATCCTCCATTCTAACTCCGTGCTATCCCTGAATTTGGACAGGAACAATATCCGTGAGGTGGTAAGAGGTGCGTTTGCTGGAGTTCCCAATCTGCAGAACCTCACAATGAGTTGGAACTGCCCCCCGGGTAGGTTGAGGGCCCTGGGCTTGCCCCCCTGTGAAATGAAGATAGACCGTGATGCCTTTGCTCCCTTGAGGAACCTGAGCAGGCTCGTTCTGGCAGGCAACAGCCTACGTCATGTCCCTGCATTGCCTGGAAACCTGACATTCCTGAGCCTGGAGTATAACAGACTCTTCAATTTCACTACGCCTCTGGGCACCCCACACCTTGAGCAGCTTCTCTTAGCAAGAAACTGCTACTATGCCAATCCCTGCAATGGAACCTTTACCATCGATGAGAGTGTCTTCCAAGGTTTGCCAGTCCTGCGGAATCTCACCTTGGGGTTTAACAGCATCGCCGAGGTTCCTCGCGGTCTACCTCCTTCCCTGGTGAGCCTGGACCTCAGGGAGAACAAAATCAGTGAGATCAATGACATGGCATTCGCGAACCTGTCGAGCCTCACGCACCTGAACCTGGAGTGGAACTGTCAGCGGTGTGACCATGCAGCCCAGCCCTGCTTCCCGTGCCCCAACAACGCCTCAATCAATTTAACCCAGAAAGCTTTCTGGCACCAGGAGAACATCACCAGCCTGAGTCTGAGAGGAAACTCCCTCAGAAAGTTGCCTGACAGTCTGTTCTGGAACCTCCGCAGACTCACTGATCTGGACCTCTCTGACAACCTGCTGGCCTACGTCATCAGGAATGGTACCTTCTTCAAGTACCTGAAGAACGTCACAACTCTGAACTTGATTTACAACTACGAACCTCGGAGAACATTCAACAATCTTTCCCTGTCTCGTCACTTCAAAGAGATGAAAAACCTGAAAAACCTGCTCCTCAGTGGCTACTTCTTCAATAGGATAGACATGTACTACCGTGCTGCTTTCCAAGAGGTGAGGGACACACTGAAAGTTCTAGACCTCAGCTATAATGCATTTCACTTTTCCATGAAAGGTATGGGTCACGGCTTTGAATTCATCCAAAGCCTGACATCGCTGGAGGTCCTGAGTCTGGCTGAGAACAACATCGGAATGCGAATCTCAAGGCAGCTGAACAGTTCCTCCCTCAAGTATCTGTTTTTCGCTGGCAACCGACTGGATATAATGTGGGATAACAAGGATGACCGATACATAACATTTTTTGAGCAACTCATTAACCTGACCTATCTGGACATCTCCAAGAACAACCTCGAATACTTCACCCCAGAAGCCTTGAGCCACCTTCCACAGAGCCTTACGACTCTGAAGGTCAGTGACAACAAGCTGTACTACTTCCCTTGGACAAACCTTAGCAGCCTCAGCAACCTCTGCTGCCTGAACCTCAGCAGGAATTACCTCACTTCCCTGCCTAGTGAGGTCACCAGTCCCAAACTGCTGACCCTGGATCTGAGCCACAACAGGATTAGTCATCTTGTCGATGATTTCTTCCGAAATGCAAGCTCACTGCACACCCTGCTGCTGAGCTACAACCGACTGAAGTTCCTTGACTCGCAGAACCTCCCGCCTCAGCACGGGCGCCTCCGGATGCTGACCCTCCATGGCAACCCGTTCGAGTGCAGCTGCAACACCTCCTGGTTCCCCGACTTCCTGATGAACACCTCCATTACGATTCCACAACTCACCACCAACATCAGGTGTGGCTTTCCTGAGTCCCTGCAAGGGGAGATCGTGCTGTCAATGGACCCCCGCTCCTGCCAGGAAAGCGACGTTTGGTTCCTCTGCACATTCCTGCTGACCGTGGTGTTCACCGTAGTTCCCCTCCTTAACAGGCTCTTTGGCTGGGACCTTTGGTATTGCATCCAGGTGTTTTGGGCAGGGCACAAAGGTTACTCCGTACTGCAGGGCAACTCAAGCCAACACGATGCCTTTGTTGTGTTTGACACTGGAAATGCGGTCGTAAGAGACTGGGTTTAcaacgagcttgccgtgaatttaGAGGACAGGGGAATACGGAGGTTCACACTCTGTCTGGAGGAAAGGGATTGGGTCCCTGGATTCGCGTGCATTGATAACCTGCACAATGCCGTGTACAATAGTAGTAAAACAATATTTGTGTTGACTAACAATGGCCCTGTCAGTGGCATCCTCAAACAGACCTTTTACATGGTCCAGCAACGGCTACTGGATGAAAAAATTGATGTAGTCGTGCTGGTCCTCCTGGATGAGGTTTTCCCCAAACTGAAGTATCTCCAAATGAGGAAAAGGCTTTGCAGGAATCTCCTCATAGTCACAATCCGTATTGTGGTGCTGTCTACTAAGATGCGGAAAGCGACAGCTACAGAGTGA

Transcript

AAFF_T00041750

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF01582	TIR	TIR domain	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47410	TOLL-LIKE RECEPTOR 7-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002224	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007249	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032755	Biological Process	positive regulation of interleukin-6 production	Interproscan
GO:0038187	Molecular Function	pattern recognition receptor activity	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-