Gene detail

Detailed information of KAJ8394656.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8394656.1	TRANSCRIPTION INITIATION FACTOR TFIID	AAFF_1.1_unplaced_124	2465624	2488891	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00044590

ATGAGAACATTAGAGGAAGTTCAGGCTACAATTCAAATCGCCAAACTCAAAGAGGAAGATTTACAACCTACGATTCATTGCTTGTCCTTTGGTGAGCATGTGTCGTCGGGGGATTACTGTCTTATGGAACTGGATGAAACGCTTTGTAAACACATCGAGTCTGGCAAGAGTCTTGTGATCAGAGGAGACAAAGATGAGCACGCAATTATGTGCAGTGAAGACAAAACTTATAGCCTGAAAATGGCAGACACTTCAAACCTGCTCCTCTTTGTTCCGGACTGTAAGACCCCAGATCAGCTACCTGGGGACCAGGGAAGTCCACACCTTGTCCACTCACAGATTTGGGGCTTCACCAACAGCTACTGGGAACTGAAACGACAGCGACCCAAGTTAAAGAAGCTGAAGAAGATATTAATGGAAAATCCGTATGAGGGGTCTCCACTGAGCCAGGAGGACGACAGTTCACAGCAGAAGTACACAATGGAAGACCTGCTTGAGCGAATTCAAGCTAGCCAAGAAGAAATTGTGGTGCAGTTGAAAAATATCCATGCTTGTAAAATTGCTGGGTTCTGGAGGACCCTGGATTTTGACTACGAGATGAAACTCCTGGGTCACGTGACACAGTTAGTGGACTCCGAGTCCTGGTCTTTCAGCAAGGTTCCCCTGAGCACCAGCCTACAAGAGCTGGGGCCTCTTGAGCCACAGGAGATGATCGAACACTGCTTGAACTGTTACGGGAGGCGTTACACTGATGAAGAGGGCGAGGTGTGTTTCGCGCTCAACGAGGACAAAGTGTGCCAGGCCACTGCCCACATGCTCCTGCAGAACGCCGTCAAGTTCAACCTGTCCGAGTTTCAGGAGGTGTGGCAACAGAGTGTCCCAGAAGGCATGAGCACCAGACTGGACCAGCTCAGGGGTATGGCTCTACTGGACCGCAGCTCCAGGCCAGAGACCATTTGCCTGCTGAGAGTGGAAGACTTGCCTGAGGACACACTGGACCGCTTCAACTGTTTGTTCAGTCTGAGGGAGAAGTGGACTGCGGATGATATCGCCCCCTACATGCAAGACTTGTGTGGTGAAAAGCAAACAATTGGAGCTCTCCTTACTAAATATGCTCGTTCATCCATGCAAAACGGGGTGGTCTGCATAAACAACATAAACTTTCAAAGAAAATCGGTGATTGGATATGTGGAGCTGACTATTTTCCCCACGGTTGTGAACCTAAACCGCATCAAACTCAATAGCAAGCAGTGCAGAATATACAGGGTTCGAGTGAATGACCTGGAGGCCCCATTCATTTACAATGACCCTACGCTGGAAGTCTGTCACCATGAGTCCAAGCAGAGGAATCTGAACTACTTCTCCAGTGCCTACACCGCGGCAGTGAGCGCTGTGGACCCGGATGCTGGGAACGGAGAGCTGTGCATCAAGGTTCCCTCGGAGCTGTGGAAGCAAGGCGACGAAATGAAGGTGCTGAAGGTGTACATAGAGTTCTCCCTGGATCAGCCCAAAGGGGGTCTGCATTTTGTGGTGCCTGATGTGGAGGGGAGCATGGCCGAGAGGGGGGCCCACGTCTTCTCCTTCGGATACCAGAATTCCACACGGTTCTGGTTCCCCTGTGTGGACTCTTACTCTGAGCTGTGCACCTGGAAACTGGAGTTTACGGTGGATGCTGCCATGGTGGCTGTGTCGTGCGGAGACCTGGTTGAGACGGTGTACACCCATGACATGAGGAAGAAGACCTTCCACTACATGTTGCCCATCCCCACCGCGGCCCCCAACATCTCCCTCTCTGTGGGGCCCTTCGAGATCCTGGTGGACCCCTATATGCATGAGGTCACGCACTTCTGCCTGCCTCAGCTCCTGCCCTTGCTGAAACACTCCATGTCCTACCTTCACGAGATCTTCGAGTTCTACGAGGAGATCCTCACCTGCCGCTACCCGTACTCCTGTTTCAAGACCGTGTTTGTGGACGAGGCCTACGTCCAAGTGTCTTCTTACGCGTCTATGAGCATTTTCAGTACGAATCTCCTGCACAGCGCCATGATTATAGACCAGACTCCTCTGACCAGACGCTGCTTAGCTCAAGCCTTGGCCCAGCAGTTTTTTGGCTGCTTCATATCCCGAATGTCCTGGTCTGACGAATGGGTGCTGAAAGGGATCTCGGGGTACATTTACGGTTTGTACCTGAAGAAGACATTCGGAGTGAACGAATACCGCCACTGGATCAAAGAGGAACTGGACAAGATAGTGGAGTATGAGCTGAAGACGGGGGGTGTTCTACTGCATCCCACATTCTGCGGTACTAAAGAAAAGGACAACCCGACTCCTCACCTGCACTTCTCCATCAAACACCCCCACACGCTGTCCTGGGAGTACTACAAGATGTTCCAGTGCAAAGCCCACCTTGTAATGAGGCTGATTGAGAACCGGATCAGCATGGAGTTCATGCTgcagGTGTTCAACAAGCTACTGAGCCTGGCCAGCACTGCCTCATCTCAGAAGTACCAGTCCCACATGTGGAGCCAGATGCTGGTGTCTACCTCCGGCTTCCTCAAGTCCATCTCCAACGTGTCAGGCAAGGACATCGGGCCCCTCATCAAGCAATGGGTAGACCAGAGCGGGGTGGTGAAGTTCTTTGGCAGCTTCGCCTTCAACAGGAAGCGCAACGTCCTGGAGCTGGAGATCCGACAGGACTACACATCCTCGGGGACTCAGAAATACGTGGGTCCGATTAAGGTGACGGTCCAGGAGCTCGACGGGTCCTTCAACCACACTCTGCAAATCGAGGAGAACAGCCTCAAACACGATATACCGTGCCATTCAAAGAGTAGAAGaaacaagaagaagaaaattccTCTGATGAATGGAGAAGAGGTGGACATGGATCTGTCTGCAATGGAGTAA

Transcript

AAFF_T00044590

GTGTATGCTAACTGGTCTCTGATTGGCCCGTGAGATTGTCAATCACGTAAGTATTCTTCCGGTGAATATTGCGGGAAAGTTAACCGCGGGAGGCTTGGTTAGTgcacattttttcccagttAGACAAGTTTGTAGCATTTAcagtcaagctaattccccttcACTGTAGGACAACAGAGTAACAGAGTAAAATGAGAACATTAGAGGAAGTTCAGGCTACAATTCAAATCGCCAAACTCAAAGAGGAAGATTTACAACCTACGATTCATTGCTTGTCCTTTGGTGAGCATGTGTCGTCGGGGGATTACTGTCTTATGGAACTGGATGAAACGCTTTGTAAACACATCGAGTCTGGCAAGAGTCTTGTGATCAGAGGAGACAAAGATGAGCACGCAATTATGTGCAGTGAAGACAAAACTTATAGCCTGAAAATGGCAGACACTTCAAACCTGCTCCTCTTTGTTCCGGACTGTAAGACCCCAGATCAGCTACCTGGGGACCAGGGAAGTCCACACCTTGTCCACTCACAGATTTGGGGCTTCACCAACAGCTACTGGGAACTGAAACGACAGCGACCCAAGTTAAAGAAGCTGAAGAAGATATTAATGGAAAATCCGTATGAGGGGTCTCCACTGAGCCAGGAGGACGACAGTTCACAGCAGAAGTACACAATGGAAGACCTGCTTGAGCGAATTCAAGCTAGCCAAGAAGAAATTGTGGTGCAGTTGAAAAATATCCATGCTTGTAAAATTGCTGGGTTCTGGAGGACCCTGGATTTTGACTACGAGATGAAACTCCTGGGTCACGTGACACAGTTAGTGGACTCCGAGTCCTGGTCTTTCAGCAAGGTTCCCCTGAGCACCAGCCTACAAGAGCTGGGGCCTCTTGAGCCACAGGAGATGATCGAACACTGCTTGAACTGTTACGGGAGGCGTTACACTGATGAAGAGGGCGAGGTGTGTTTCGCGCTCAACGAGGACAAAGTGTGCCAGGCCACTGCCCACATGCTCCTGCAGAACGCCGTCAAGTTCAACCTGTCCGAGTTTCAGGAGGTGTGGCAACAGAGTGTCCCAGAAGGCATGAGCACCAGACTGGACCAGCTCAGGGGTATGGCTCTACTGGACCGCAGCTCCAGGCCAGAGACCATTTGCCTGCTGAGAGTGGAAGACTTGCCTGAGGACACACTGGACCGCTTCAACTGTTTGTTCAGTCTGAGGGAGAAGTGGACTGCGGATGATATCGCCCCCTACATGCAAGACTTGTGTGGTGAAAAGCAAACAATTGGAGCTCTCCTTACTAAATATGCTCGTTCATCCATGCAAAACGGGGTGGTCTGCATAAACAACATAAACTTTCAAAGAAAATCGGTGATTGGATATGTGGAGCTGACTATTTTCCCCACGGTTGTGAACCTAAACCGCATCAAACTCAATAGCAAGCAGTGCAGAATATACAGGGTTCGAGTGAATGACCTGGAGGCCCCATTCATTTACAATGACCCTACGCTGGAAGTCTGTCACCATGAGTCCAAGCAGAGGAATCTGAACTACTTCTCCAGTGCCTACACCGCGGCAGTGAGCGCTGTGGACCCGGATGCTGGGAACGGAGAGCTGTGCATCAAGGTTCCCTCGGAGCTGTGGAAGCAAGGCGACGAAATGAAGGTGCTGAAGGTGTACATAGAGTTCTCCCTGGATCAGCCCAAAGGGGGTCTGCATTTTGTGGTGCCTGATGTGGAGGGGAGCATGGCCGAGAGGGGGGCCCACGTCTTCTCCTTCGGATACCAGAATTCCACACGGTTCTGGTTCCCCTGTGTGGACTCTTACTCTGAGCTGTGCACCTGGAAACTGGAGTTTACGGTGGATGCTGCCATGGTGGCTGTGTCGTGCGGAGACCTGGTTGAGACGGTGTACACCCATGACATGAGGAAGAAGACCTTCCACTACATGTTGCCCATCCCCACCGCGGCCCCCAACATCTCCCTCTCTGTGGGGCCCTTCGAGATCCTGGTGGACCCCTATATGCATGAGGTCACGCACTTCTGCCTGCCTCAGCTCCTGCCCTTGCTGAAACACTCCATGTCCTACCTTCACGAGATCTTCGAGTTCTACGAGGAGATCCTCACCTGCCGCTACCCGTACTCCTGTTTCAAGACCGTGTTTGTGGACGAGGCCTACGTCCAAGTGTCTTCTTACGCGTCTATGAGCATTTTCAGTACGAATCTCCTGCACAGCGCCATGATTATAGACCAGACTCCTCTGACCAGACGCTGCTTAGCTCAAGCCTTGGCCCAGCAGTTTTTTGGCTGCTTCATATCCCGAATGTCCTGGTCTGACGAATGGGTGCTGAAAGGGATCTCGGGGTACATTTACGGTTTGTACCTGAAGAAGACATTCGGAGTGAACGAATACCGCCACTGGATCAAAGAGGAACTGGACAAGATAGTGGAGTATGAGCTGAAGACGGGGGGTGTTCTACTGCATCCCACATTCTGCGGTACTAAAGAAAAGGACAACCCGACTCCTCACCTGCACTTCTCCATCAAACACCCCCACACGCTGTCCTGGGAGTACTACAAGATGTTCCAGTGCAAAGCCCACCTTGTAATGAGGCTGATTGAGAACCGGATCAGCATGGAGTTCATGCTgcagGTGTTCAACAAGCTACTGAGCCTGGCCAGCACTGCCTCATCTCAGAAGTACCAGTCCCACATGTGGAGCCAGATGCTGGTGTCTACCTCCGGCTTCCTCAAGTCCATCTCCAACGTGTCAGGCAAGGACATCGGGCCCCTCATCAAGCAATGGGTAGACCAGAGCGGGGTGGTGAAGTTCTTTGGCAGCTTCGCCTTCAACAGGAAGCGCAACGTCCTGGAGCTGGAGATCCGACAGGACTACACATCCTCGGGGACTCAGAAATACGTGGGTCCGATTAAGGTGACGGTCCAGGAGCTCGACGGGTCCTTCAACCACACTCTGCAAATCGAGGAGAACAGCCTCAAACACGATATACCGTGCCATTCAAAGAGTAGAAGaaacaagaagaagaaaattccTCTGATGAATGGAGAAGAGGTGGACATGGATCTGTCTGCAATGGAGTAAGTCAGGACCGCGGAccgcgatcttccgcaagagactcaaaacccaccatttcagactccactaacactgaatcctgtaccatctacccaattgtcatcaccactgcctacttgctcaacacttcttgtatatgtatccctgcctactcattcaataaaaaataaaaagaattactaaccttttccttcccagtgttacaggtatgctacgcagctgcctgcaacgatgtctatcgctgtattactgcactgatctcctgcgctaactatgattgttccttccatgtattaatgcacatcttgtgagtcgctctggataagagcgtctgctaaatgcttaaaatgtaaatgtgcagcgtGCAGGTTGAGTACAGACAGATCAGACACCAGCCCACCGAGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09724	Dcc1	Sister chromatid cohesion protein Dcc1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019128	Family	Sister chromatid cohesion protein Dcc1	Interproscan
IPR027268	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR042097	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0007064	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0031390	Cellular Component	Ctf18 RFC-like complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-