Gene detail

Detailed information of KAJ8394411.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8394411.1	PROTEIN EIGER	AAFF_1.1_unplaced_126	655421	660522	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00046220

AAACGGTGTAACCAGAAAGTCAGTCAGCCCTGTGATGGCATCTACATCTGAGCTTTGTATGATTTAGCATGTCTGGCTGGATTTCAGTAAAGAATTCCCTCACCAGGAGCGTAATCGTTAGCCATCGTAATGTGTTGATGTTTGTGACTTTCGTGGCTTTATGCCTGGGCCTTTTTCTAATGCGTGAAGTCAGCGTCTTAAGAGACGATCTGCAAAAACTCAAAGCGGAAATTTTGCTGCACTGGGGCCACTCGACGTCAACAGATCTCCGAAATGGAACGCGTATTTCTGAGACGTGGGAGAAATTAAGGTCTTACTCTACCTTACATCATACGAAAACCGAGAGAGGTCAGCAAAATCCGCTTAAGATTTCCTTCTCAAGAAAGAAGCGAGAGGAGGCTGAAGGTGTGGCACTGCGGTCGTTTCTGCAGCTGACTGCCACATCCAATGAAAATCCAGTTGTGCGAGACAATGTGACGATGATTCCGTGGACTGTTTCCATTCAGCATGGGGAAGCTGTAtcggtaaatggcaataaaataattgtacagcAAGATGGCTATTATATGGTGTTCAGCCAGGTTCTGTTTCACAACCCCGAGGCGGTCATGGGTTATTTGATCCGGAGACGCAAGGCCAGTGTGTCTGGAACAGAGCAGAGATTCACCGACCTGCTGCGTTGCATTCAGGAGATGCCCAAACACAACTGTGCCAACTCCTGCTACACTGCagGCCTGGTGAAGCTGGACCACGAGGACGAGCTGGAGCTGTTGATTCTGGACCGCCCTCAGGCTGAGGTTGCCATGGACGCAGTCTCCACCTTCTTTGGAATCATACAGCTCCACTGAGGTCACCTGTGCCTGGCCACACCCCTTCCTCGTCTCACCCTGACCCCTCCCCCCAAGCCAGTGGGATACACCTTCCCTCTGGATGGTTCCAGCGCTCTTGTGTAAAACTGTAACTGGGAGGGACGGGAGGAGTTGGTGAAATTGGTCTCTGGCTTGCAGACATGTGCAGGCAATCTGTAGTGAACTGGTGTGCCGGTGACCTACCGGTGACTCGAGAAGCATAATTGGTGAATccaaaatgatatattttttatttgtggcTGTCTTTTTAATATGGTCCctataaatactgtatgtgtgtgtactgtattacACTATTCATATGAGTTCCTTATCCATGGGAACACATGTATACCACTGTATATTTCAGTGCCTTATCTTACTTCAGCGGTATGACATAAATGTCTTAACTGAGAATAGATTTTGGTTGCAAGACTGGTTTCTTTGCTACTACTCtgaatgtggggaaaaaaatgtaagccAGAAGTATattatgggaggagaaacatTAGTTCAATTCAAGTTCAAGACTTAgaagttgtagttgatcaaagtccaTCAGCATCTAAGCAgagtgctacagcagtgaaaaaggctaacaggatgctgggatatatagcaaaacatattgagtataaatcaatggtggttatattgatattatataatgcctttgtcagacctcacttagattACTGTgtacagttctgggcaccacactacaagaaagatatagaagctcttggaaaagTGTAAAGGggaactaaattggttcctggtatgaaagtttccaggaaagacttaagattcttaatctattcaagctaaACAAAAGGATactaagggggatttgattgagatttttaaattcataaaaaggattaataaagtgaactattactttttttaagttgagttcagttagcagaagaagagggcacaggtggaaatttaaagGAATCCTACATTTGAATCATATGCTGTGAAGATTTCACCCTGGGcAGCTGCTCACAATACAGAAGATGACATAAATTTACTGAATGCCACACATTGCAGTATGACTAGGAGCAGGAAAATTCATTGATTGGCTATTACGGCTCTGATGTCATGAGCCATCGCTCATGGTAACAGCACCTGTTTTTAATTGATAATAAACTGTCACAGTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006052	Domain	Tumour necrosis factor domain	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR051748	Family	Tumor Necrosis Factor Ligand Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15151	PROTEIN EIGER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030890	Biological Process	positive regulation of B cell proliferation	Interproscan
GO:0048018	Molecular Function	receptor ligand activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-