Gene detail

Detailed information of KAJ8393979.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8393979.1	30S RIBOSOMAL PROTEIN S18	AAFF_1.1_unplaced_131	2242871	2247134	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00055120

ATTTGATAGCTCTAGTTTCACGATGAGACAATACACGGGGGGTACCAGGTACCAGCAATAGATAAATATCACTAGATACTCGATTTGTCATGTATATTTTGCAGTATTTTTGCAgtttatttccttttatattaTACTCGGAATCAATTTTGGATAGTAACAAGGTCGCTTTTACAATGGACGGTATCACTGTGTGCTTGAAATAACGTTTatattttgaattgatctcTATGGCCACTTCCGGGTTATGACCCCATACAATGTCGCCGTAGTGTTCACGTTGTATCTAGTgtcctgtatatatattgtgcattgctttaaaaaaatgctcgCAGCCAGAGGTGGTCGGTTTATTCAGCATGTTTTTTCGCCGTGTACGACAATATATTCAACTACCATAACAGGGCAGTGTGTTCGAATCATTTCCAGTGAGATTCAGAAGAGCAAGAATGACATGCCAATAAAGATGGAGAATCCGTACAAGGAACCCGCGAAGGGCTGCGTTCTCTGCAACATCACAGTGGATTACAAAAACGTACAGCTTCTGTCTCAGTTCGTATCACCGCACACAGGACGCATTTATGGCCGGCACATAACCGgaCTGTGTGGTCAGAAACAGAGGGACATTTCTAAAGCCATAAAGAAAGCTCACCACATGGGTTTTATGTCCGTGACACTGAAAGACCCCACGTTCCTGCGAGACCCCAACATCTGCAGTATCAAACACCTTGAATAGCCCCATGTTAACCTGTGAAGGATGAGTTTAAatattttgcaataaagaaaTGACATCTGTGACACTGCAGTAACCCCATtcaaatgtacagaatgttttgtaaCAGGAATTGCTTCATGTATTGTTCCAGTCAATGGCACTGGCCCGGTTAAAGTTAATAAACCTGTATCATGTTTAATGGTGCCTAATATAGAAATCAAATCACTGAAAggtttttaattttgaaatcTCATCCAGCACTCatcacaaaatattttgttcttGACTATACTGTAAAGGATCAGCTGCTTTTATTGTATTTGACCCTTGATTACCAATTTGCACTACTTATTGTAAATGGTTGGTAAATTAAGCCAGTGAACTTGATATATCGTCTTAGAATCCATATTAAATCACAAATTGCTTACTAAACTCTTAATTAGTCTAATCTATTAGATGGATATGTGAGAAAGTCCCAGGCAAAAAGTTATTTGGGGGTCTTCAGAAGACTGGGGAATTCAGCATTTCCCGATTCCCATTCTGAGAGGCCAGCAGCTCTTCCTCGGTCTCTGACCCGCTGACTGTCAGTGGTCCTTCGCTGTCTGTGTCCATGgcactcctcctcttcctcttggtTGCCTGGGATTCCTGTGTGAGGCGGCGCTTCCCACAGGGCCTAACCAGCCTGCCTGTGCCCCACCTCTTTGCTTGGGCATCCCAGTGGGTCAGGATCAATGGCAGTGATGTGATCTCAATCCCATGGGTGGCGCTGCAGCAGAACCCCAGATCCGGGGTGCCCTGGAAGGTGAGTGCCTGGGACCGTAGCAGAGGGGATTCTGGGAAAAGTGCTCTCATGGCCTTGCACAACATCACATTCTCCTGTGGCAGGTTTGAGGCTGGGTGATGATCTTCTGAAATGCACAAAACTGATGGGTTATACTTAGAAGTGGCTTAATATCCCCTCTGGTGGTCTGGATCACACATTAATACCTGGAGAGCtgctgtgttgttttatttgtcatgaaATTCCTACATCATCTCAGCAGTTGGATGCACCTGTTCACGTGAAGCCAAACTCAAAGGAATAACAGACCATATCTGTGTGCATTGTGTAGAGAGAAATGTCTAATTTCTGACACCACTGCCAAATGGGAAAGTACTATAtgacaataatttaaaaactttGATGAAGCTAACGTTAACCTGCCAGTTTGTATGCCAAGCTAGCATGCCAATTCCTGTTCTTGTTTGCCAAATATGGGATCAAATAAATGCGGAAAGACAACTACTAAATATATAGCTTAGGGTGCATCAAAAAACGtggcagtataaaaatctgttcaatatataaatgtttagGGGTCACGTACAGTGAATTAATAACTCAATTTATACTGGGAAAGGAATTATCTGGCACAAATGTAATCAACTGAACAGGATTtgaaaatgggaaataaatgaTCTCCCCCATCTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01084	Ribosomal_S18	Ribosomal protein S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001648	Family	Small ribosomal subunit protein bS18	Interproscan
IPR018275	Conserved_site	Small ribosomal subunit protein bS18, conserved site	Interproscan
IPR036870	Homologous_superfamily	Small ribosomal subunit protein bS18 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13479	30S RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005763	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan
GO:0070181	Molecular Function	small ribosomal subunit rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-