Gene detail

Detailed information of KAJ8393213.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8393213.1	SERUM RESPONSE FACTOR HOMOLOG	AAFF_1.1_unplaced_139	744783	784590	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00062850

ATGAACTCAACTGCCTACATGCAGAGCCTGCTGAAGCTGCATCGCCCGTCGCGGGTGCCGTGCCCGTCCTGCGTGCCGACCCGGCCCAGCCCCCTATCCATGCTGTACTACGAGAATGGCAGGTTTGACCCAGACAGGGAGAGCGCACCCCAGACATACAGTGGTTCGGACGTTGACTCTGATTCGGGGGATGACGATGACCCCGTGGGTTCAGTCGGGGACAGCAGAAGAGGGGTGAAGCGGGAGAGAGCCGAGATGGACGCCGCGGTCGCTGGGCAGGAGGCTGGGGTGCAGCCCGGTGGCTACGGTGTGGTCTCTGGCGTCTCTCTCGTTGCCGGAGCAAAGCCTGGAAAGAAGACCCGTGGTCGAGTGAAGATTAAAATGGAGTTTATCGACAACAAGCTGAGGCGATACACAACTTTCAGCAAGAGGAAGACTGGAATCATGAAAAAGgcctaTGAGCTGTCCACGCTGACGGGCACACAGGTGCTGCTGCTGGTTGCCAGCGAGACGGGTCACGTGTACACCTTCGCCACGCGCAAGCTGCAGCCCATGATCACCAGCGAGACGGGCAAGGCCCTGATCCAGACCTGCCTGAACTCGCCCGACTCGCCGCCCCGCTCCGACCCCACCACCGACCAGCGCATGAGCGCCACCGGCTTTGAGGAGACCGACCTCACCTACCAGGTGTCCGAGTCGGACAGCTGCGGCGAAACCAAGGACACGCTGAAACCAGCCTTCACTGTGACCAGCCTGCCCGGCAGCACCAGCACACAGTCCTCGgcccccaccacctccaccaccatGCAGGTCAGCAGCGGCACCTCCTTCCCCATCACCAACTACTTGGCCCCCGTGTCTGCCAGCGCCAACGCCAACAGTATCACCAGCGCCAACGGCACCGTACTGAAGACCAGCGGCGCCTCGGGTGTCATGCAGCTGCCCAGCGGCTTCACCTTCATGTCAGGCACTGCGCTCCCCCCCGGCACCCCCACCATTCCACTGAGCCAGCTGCAGCAGCACTCGCTGGCCATCCAGGGCCAGCACGGCCAGACCATCACGGCTGCACAGACACAACACGGCCAGCAGGCCGTCTTTCGCTTCCCCGCAGCCGTCTCACTTAcagGAGGAGGGATGGCACAGCAGCTCCAGGCCATCCAGGTTCACCCCAGCCCACAGCAGGGCTCAATCAACACCAGTGACAGCCCAGAGGCCTCGCAGTCCTCCACCAGCTCCACAGtgAGTGTACCGGCGACTATCGTCACCTCCTCAATACCCACCTCCATGGCGGGTCACATGATGTACCCCAGCCCCCACACGGTGATGTACGCCTCCACGCCCACGCTGGCTGACGGCGGCTTGGCCGTGCTCAACGCGTTCTCACAGGGGCCCATGCAGGTGTCCCACGCACAGGGCCAGGATGCAGGTGCTGTTCCTCAGGTGTTCCTCACAGCGCCCCCTGGAACAGTTCAGATCCCCGTCTCAGCAGTGCAGCTACACCCAATGGTGATTGGTCAGCAGTCCACCGGCGGTAGCAGCAGTAACCTGACTGAGCTGCAGGTGGTCAACCTGGACACCGCCCACAACGCCAAGAGCGATTGACAGACGCACGCACCAGCCCCGACCACAGGACGCACGGACGCTACTCATAAAGACTGCCACCATTATTTATTGATGCCTTCTCACAACATTTTAACaccttaaaatgttgtttatatAAACGTATGAACCAAGGCATAGGAAGGAGGCAATGTATTGAATTTTGGTCCTTTGGACCCACACTTTACATTTACCCGAGAAAgactttttgtgtgtgcttttaaaaaaaactttgtgaTACGCACACACCGAAGCGTAGGTGCTGCAGCTTCACCCCACAGCCAAAGagacgtttgtgtgtgtgtgtgtgagtgagtgtgcgctTTTGTTCGGGGTGGACACAGCGGGCTGAAACGGGTGGCAATGGGAAAGTGTGAGAGCAAACAATATGCGGAAATGTAtataagcattttttaaattgaaacagaaaatgatatttttaGCCCATTTGTGCAATGGCATGtggctgtttttttaatgtattcattttgtatgtatatgtgacTGATGACTTACAGAAATTGAATTACacataaatgtatgtaataGACGTGGATATGACGTTGATTTATATATGCTCGTAGGGAATCAGAGCCAGGAGCCAAAGGTCTTTCAGTTGGTCTTTCAACAGAATGTTGTGCCTGGATACGTGTTGGATCGTGAGGGGCGCGTCTTATAACTGGGCCCACATGGAGCCCTTGCAGCGGCAGTGTCATTTGTGAGCGCACCGGTTAAAAGAAAGAAACCGCCTCGATCTCTGCATTTTTACATGAAACCCCAAACCTCCGCTCCTTACCGCCAGGTTCTGGGCAACAAAGTCATTTGAAGAAGTTGGTGgggttggctgtgtgtgtgtgtgtgtgtgtgtgtgagagagaaagataattGACTTCAGTGTTGACCAATGACGAAGGGATTCAAACCGCAGGATCACCTCCACTCTGTTGGCAGCTTAGTCTGCCTTCACAGGAACTCTCAatccatgtctgtgcaagctcaCCTGACGGACTGCAAACACAGGTAAAGACTCGCATCACGTTTCAGAGGACAGCGTGTTCTTGTCTGTGCTCACCTCAGTTCACAGAGGAGGTTCTGATGATGGCCCGTTTGTGAATATGATTAGGCATTCCGAATTGTGAGCAAAAGGGGGTAAAATAATGCATTGTACGTTTTTCTCCTTGTGAACATAACCAGCAGTGTCAGGGCTCCTCCTCCTGCACTTCACCCGATATTTTTCTTCTGACGTTGTCATTTGGTCTGTTCTGGCGCGTGTTGAAATTGAATACACTGTGTGTAAGAGTTTCAAGTGAAGACCGTTGTATTGTCATATAACAAACCGTCCTGTTAAACAAACCCTAAATTCAAACCTTGCGTTCCAcacaattgggagaaattatTTGGCAGTGTTCAAAtcatattaaaaaatgaaaccaggcttcttttttttcttttttttttgctgaggcAAAGTGTTATATAAATTTCCCTGATGGAAAAAATATGAGTAAATCTATTCTCTTTATAAAGCACAGAAgtcacttgtttttgttttaccccACGTAACAGGTAAACACATTgttaacattttaaagaaatggaATGTACACAGGCTGTGTTGTGCAGTTCGATGAGTAAAGGTTATTGTGTTCTTTTTGTGAAGAACAAtgttgtttgtatgtatgtgtaacaGTGACGAGGTTtctttttgtaataaaaaaaaaaaaagcataaatcaTC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	SRF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00319	SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001839	Domain	Transforming growth factor-beta, C-terminal	Interproscan
IPR002100	Domain	Transcription factor, MADS-box	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR033897	Domain	MADS SRF-like	Interproscan
IPR036879	Homologous_superfamily	Transcription factor, MADS-box superfamily	Interproscan
IPR050142	Family	MADS-box/MEF2 Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0000987	Molecular Function	cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0010736	Molecular Function	serum response element binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-