Gene detail

Detailed information of KAJ8392875.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8392875.1	POLYCOMB GROUP PROTEIN	AAFF_1.1_unplaced_142	1293156	1314015	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00070790

atGAGACAGGTGTGCCAGCACATTGGGGCAGGACACATTTTTGTAATCCATCGAAATTCCCCGTTGGTTTCTAAGgAGGAAATGGCTGTATTTCAAGCAACACGCCTCACTTTGACCTCAGCCATTTTGCTGGTGCTCTTGGCTGAAAGGGGCCAGGCCAGTGACAACACCAAGAACTGTAAGTTACTTGAGGAAACACAGATTGCGAGAGAAACTGTCAGTCGATTGGAGCCCCTCACCAACAGAACATTTTCTGCGACGGGTCAGTCAGGGTCGGACAACTACACGTACCTGTTCCAGGTGTGTGGGAAAGCAGGCAAAGATCCGGATGGAGGGGTGGTGCAGAAAGATGTCAGTGGGAAGGAGGTTATCATTGGGAAGTACACGGCCATGGAGGCGTTTGGTGGTGccAACTGGGTAATGTTGATCTATAGGAATGGTTCGGCTTATAGCAAGCGAACCTGTGGCAGCGAGGAAAGGAACGCCATGATCATGATCTCCTGTGAAAGGGGAGTCGTAGCGagtgaCATGTCAGCGAtagtggaggagagggggaagacgAACAATTGTTTCTATCTATTTGAGCTGGGTTCCAGTGCTGTCTGTCGTCCAATTCCTTCTCGTCTGAGTGTCGGCTCAATACTGCTTATTGTTGGCTTTTCGTTCTTGGCGGTGTACTTGATTGGTGGATTCCTCTACCAGCGATTGGTTGTTGGGGCCAAGGGGGTGGAACAGTTTCCCCACTACTCCTTCTGGCAGGAGATCGGCAATCTCACTGCCGATGGGTGTGACTTTGTGTGTCGGTCCCGGGGGAGTCGGGAGGAACCGCCTACGTACAGGGGTGTGGCTTCTGAACCCCTGGGGGAGGAGCCAGAAGAGAGGGACGATCACTTGCTGCCAATGAGAAGGAAAAGGAGGTCGCGATATCTCCTGTATTCAGCCACGATGGACACAGAGGGGGACCAGAACTCAGGCGCTGCTAATGGGAACACGTCTTCTGGGGGGAATTCTCGCCCCCCTCAAATGCAGCAAATGTCTCTTTATGAGAGACAGGCtgtacagGCCCTCCAAGCCCTGCAGAGGCAGCCCAACGCAGCACAGTATTTCCAACAGCTGATGTTCCAGCAGCAGATCAACAGTGCCCAGCTCCACAGCCTGGCAGCCGTACAACAGgccacTCTTGCTGCCAGTCGTCAGTCCAGTTCTCCCAGCAACAGTGTCTCCCAGGCCACCAGCACTGCCCACTGCACTGTGAATTTAAGTTCCTCTGGAGGAGGAGCCATGACCAATACACGTCCTCTTGGGCCTacttcctctgcaacatcatccaCTCTCAGCCAACCTGTGCTGCTGGGTGGAAACACGGCTGGACAGGGTCAGATGTACTTGAGAgTCAATCGCAGGGCACCACTCGCTTCTCAACTTATCTTTATGCCTGGTGGCACGGCAACTGCTGCCGTGGCGACTGTTGCTCAGCATCAaccacaacagcagcagcagcagcaagcaGCAGCAACAGGAGGTCACTCCCACCTCCTCCAATACCCAGTCAGACAGCGATCAGGTGCAAAACCTGGCTTTGCGCTGTGTTTCCAGCCCCAGAGTCACAGGGGTGAAGACCGAGTGTCCGGACCGCAAAGACACAGttGCCTTCTCCCTTGTTCAACAGccccaacagcagcagcagcaCTCCTCCTTTCTCCTGCCGGCTTCTGTCAAGCCCGTGCTGTTACCACGGTGACCTCGGCCGCCACAGCGACACACATCCTCGTCCCCACATCCAGCTCCTCCCAGGTCTACCCTGGCTCCTCTGCTGCCCCTAAATCCAACGTTAACACTCAGACACTGGTGGTTCAGCCCCTACAGCAGTCCAACACTAATATCAACCCAGAAAAAATGGGCCACACTTCTGGCCCTGTTCCCATCCAGCCCAAAACTGTGCAGGGTCTGCGATTACCTCTCCAGCTCCCTCCCCGACACCCGCCTCCCATTCTTCCAGCCCCACCAAGCAACGGCCAGTCTAAtgcctcccaccccccacctcatGTCCCTGTTCAGCTGGTGGGTGCCAGGCAGGGTTCGCTAGGAAACTCCCAGGCTTTGGCCTTGGCCCAGGCCCGAAGCTGCTGTGCCCAGGACAGTGGGGCTTTAAATAATTCCACAAATTCTAATGTTGTTACTATGAATACTGCATCAATAACAGTGCCCCCCACTGGTGATTCCGTGTATGGGCAGCCCGTACAATCCCAGGGGAAGCTCGTCAGTGGATCTTTGAAGAGGAAGTCTGAGTCTGATGTAGCCAGTGAGATGGCAGCGGGCTCCACTCCTCTCTGCGCTCCTCTACTGAGAGAagtctcccctcccctctctgccccaGCCATTGACTCAGCCGGGACAGCTTCCCCCTCCCCGCCAGCGCTCTCCTTGTCCCGGGCgggagggggacagggggaGAGGGCACCCCCACCGCAGGCTGTCGTCAAACCCCAGGTCCTCACACACCTGATAGAAGGCTTCGTTATCCAGGAAGGAGCTGAACCCTTCCCTGTGACCGGACCGGTTAAAGAGCGAGCCGAGGGGGCATTTCCCATAGCAGTCCCGCCCACCGGCCCAGCAGAGTCTGAGGCTCCTACAGTGATGAAGTGTGAGTACTGCGAGGGCTTTGCTCCAGCCAACCAGTTCAGAGGCTCCAAACGCTTCTGCTCCATGACCTGTGCCAAGAGATACAATGTGAGCTGCAGCCATCAGTTCCGCACTCGCCGCGGACGAGCTGCTCGGGGGAGACATTTGCCTGTCAAGTGTCGCTCAGAGTCCAGCCGATCAGAGGACATCTCCAGCtgtgaggaagaagaggaggaggactctctgtccctttctccTGGCTCCTCCTTTTCCTGCCCCCGACCGGCTCATTGTGGGCCCCAATTGGATGGTTCCACTGCTGGTGGTCTCCCAATAGATGGCAGCCACTTCCTGTCTGGCAGCCCTTCCCACTGGAGTGTGGAGGACGTATGCCAATTTATCTCCTCACTGCAAGGCTGCGAAGACCTGGCGAGTCAGTTCCTCTCGCAGGAGATCGACGGGCAGGCTCTGCTCCTGCTGAGGGAGGAGCACCTCATGTCCACCATGAACATCAAACTGGGACCAGCACTCAAGATCTGTGCCTCCATCAACAACCTGAGGGACTGA

Transcript

AAFF_T00070790

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF02157	Man-6-P_recep	Mannose-6-phosphate receptor	Family	Interproscan
PF21319	zf-FCS_1	Zinc finger, FCS-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000296	Family	Cation-dependent mannose-6-phosphate receptor	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR012313	Domain	Zinc finger, FCS-type	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR028927	Family	Mannose-6-phosphate receptor	Interproscan
IPR038603	Homologous_superfamily	FCS-type zinc finger superfamily	Interproscan
IPR044865	Domain	MRH domain	Interproscan
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006622	Biological Process	protein targeting to lysosome	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0019904	Molecular Function	protein domain specific binding	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-