Gene detail

Detailed information of KAJ8392604.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8392604.1	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	AAFF_1.1_unplaced_145	2575785	2578869	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00074820

AGACAGTCACTTTATAGCTATATCTCGTTTTGCTTCCAGGACCTTTATTTTCTCAGTCCTTTTCTTATCCCTTCCCCTTGTTTgaagcgagctagctagctagatccaCCCTGACACATCTGCAGTATCCTGGTTGCGTCCCGATCCGACGCGGGTTTTCAGGCCAATTCATGTGTATCCTTTCtagttgttattttatttcgtACCATTAATCGCTTGACagtttctagctagctagtttcgTCTTTTCCGAGAATGTCTGGGGCGGCCGCCGGTGGGGCGTCTTCATGCATCGGAGCAGCGACTGCAAGTGGTAGTGCCGCCGGATCTTCTGCAATCGGAGCTGGTGGAGCCGTAGGGGTGGCCGGCAGACTACCCAGTCGGGTTTTGGAGCACGTCTTTTCATACTTGGAGTTGCCTGATCTGATACGGTGCTCGTTGGTGTGCTGGCACTGGAACAGCTGTCTCGCCGATGAAAACAGCGAAGTGTGGAGGAGCCTTTGTGCCCGTAGCCTGAGCGAAGAAGCAATGCGCTCCGATATTCTGTGCAACCTTCCTACCTATAAGGGAaagCTGAAGTCCTACCAGCATGCCCTGAGCTCCCATGACTGCTCACGCAATGTATACGTCAAGAAAAATGGCTTCACCCTGCATCGCAACCCCATTGCCCAGAGTACAGATGGCGCCCGAGGAAAGATTGGCTTTTCAGAAGGCCGGCATGCATGGGAGATCTGGTGGGAGGGTCCCCTGGGGACGGTGGCTGTCATCGGCATAGCCACTAAGAGGGCACCCATGCAGTGCCAGGGCTATGTGGCGCTTCTGGGCAGTGATGATCAGAGCTGGGGATGGAACCTGGTGGACAACAACCTACTTCACAATGGAGAAGTCAATGGCAACTTCCCTCAGTGCAACAATGCACCCAAGTACCAGATTGGAGAGAGAATACGTGTCATCTTAGACATGGAGGACAAGACACTGGCCTTCGAGAGGGGATTTGAGTTTCTTGGAGTGGCTTTCCGAGGGCTGCCCAAAGCCTGTCTCTTCCCTGCTGTGTCAGCCGTGTACGGGAACACCGAAGTGACAATGGTGTATTTGGGGAAACCGCTGGATGGCTAAAATCACCTTAGGGTGCCACTGTGGTGGCAGAAGTGTGCCAATGGACTGGTTGTTGGCACAGAGAGTACTCCTAACATTCCATTATGGAAGTGCAACCAACGTCGTGTGGAGAATTGCAGTTGGGCGTAATGGGAGCCTGATTCGGGGTTAAGGCAGGGAGACTCCATACATTGGCCACAGTGTGGACAAATGACCTCAGCTGTCTGGGCTATTTTAACTTATACACAGTCTGAAATGactttttactgtattttatgaaGTGACATTGCTTAAAACCCCTAGAGGAAATTTTATGTCAATTCAAATGAGgccaaattaaatataaattgtggcaaatatatcaaatatataatgaGGAATGCATAATAATGAACATGCTTAATAATATTGACCATTTAGCAAGTAGAATATATGTGATTATGTAAACCTCATGTCTATAGCACAAATGAAACTGAAATGGGAAGCGTGAAACAGATGCGTTGAAGCCAAAACAATGTAATTGTGCACATATTACCAAATTCCACAAGGCTACATGTGGCCACTTGGGACAACCCCCAGAGTCTGGGCTCCTTCTTTAGGGGAGCCAGTCATACGCATGCAGTTGActttaactcccttttcctgtgCACACATGAAGTGTAAAGAACTGGAGAAGCTACCTTCTATATAATGTGACTGACCATTTATTGTCTCGTGGTCTAGTAGAATTTCATGAAGCGTGTTTGTTAGGTTTTATCCGTGGCATCAGTGAGATCACATTGCCTTCAAATAAAGTATAAGTGGGTAGTGGCCTATGAGATGTCAGTTGATTATGTACTTTTCTTTGGTTATGGGAACAAAAATACCCTGATTTGTTATAATGATGTATGAAGTTAGCTTGGTTCTTATGACTGAATTATGAATGAGTTAATGAAACCCATGGAGTCCTGAAACTT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622	SPRY	SPRY domain	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR035784	Domain	Fbxo45, SPRY domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050672	Family	F-box/SPRY and SOCS box protein families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan
GO:0060386	Biological Process	synapse assembly involved in innervation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-