Gene detail

Detailed information of KAJ8392227.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8392227.1	STRICTOSIDINE SYNTHASE-RELATED	AAFF_1.1_unplaced_148	1004175	1044501	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00077950

ATGACGTGGACGAGCACCATGAGCAGTGGATACAGTAGTTTAGAAGAAGACTccgaagatttttttttcacggCTAGAACTTCATTTTTCAAGAAGCCCTCAGGGAAACCAACACACTTCAAGGATGTCGAGAAGGAGAAGGACCTCCGTACTCACCTCAGCAGGGAGGAGATTCGGCACAAGGTGGAGCTGTACAACTCATCCGTCAGAGACCACCTCAAAATGACCCTGaACCCGAGCGGTCTGTACACGGGCTTCATCAAGGTCCAGCTGGAGCTGCTGCGGCCAATCACGgtgcggggcgggggcgggtcCGGGCCCGCGGGGTCCACCCGGACACACCCCGTCAGCAACAACAGCGGGGAGGAGGCCTTCTACCTGCCCCGCGGCTCCATCAACACCCTCCACATCAGCAGCTCCAACACCGTGCGGCAGGTTATCGAAGCCCTGCTGCAGAAGTTCACCGTGGCCGACAACCCCGCCAAGTTCGCCCTGTTCAAGCGCTACCGCCGAGAGGACCAGGTGTACGTGTGCAAGCTAGCGGAGGGAGAACACCCCTTGTTCCTGCGTCTGGTGGCGGGACCCAACACCGACACCTTGAGCTTCGTCCTGAGGGAGCAGCAGACGGGAGAGGTCATGTGGGACGCCTTCTCTATCCCAGAGCTCCACAACTTCCTGCGCATCCTGAAAAAGGAGGAGGACGACCAGGTGCAAGTCCTGACCAAGCGCTACTCCAACTACCGAGAGAAGCTGGAGGAGGCGCTGAGGGCAGTGGGGAATCATGGagagcagTCGGAGGTAGAGTTGAACTTTTTCCCCGATGTATTGCTTCACGCGAGTTATGTGACCCTATCTGCTGAGAAAGAGACGCATAAAGTATCCGACAGAACTCAGTCGTTGCAGTCGCTTGCAGAACGAATTATGATGCGACGGCGCGCTCTGTATGTCGCGGCTCTCGCTGTGATCGTGGGGGTGTTCCTCACGCCCTCTCCCATTGACCCTGAGCCGTTCATATTTGAGGGTCCCCCACCAGCCCTTGAGGGCCCCTTGACAGTGAACAACAGGCTTCAGCAGGGTCGCAGGCTCTTCTCTGGGCAGCTTCATGGGCCTGAATCTTTCACCGCTGATGAAGAGGGGAACGTGTACACTGGCACAGTGGATGGAAAGCTGTGGAGAATCCATCAGGACCAGCTCTATTTCATCACACAGATGGGGCAGAACATCCCAGAATGCGGGACCAGTACGGACTATGAGCCCGTGTGTGGCCGTCCTCACGGGTTGAGACTGGACCGGCACGGACAGCTCATTGTGGTCGACTCCTACATGGGTCTGTTCCGGGTCAATCCGCAGAGTGGGGAGAAGACCCTTCTGCTGTCCAGCCAGGAAGGTGCTGACGGGATCCCATTCAGCTTTCTGAACGGTCTGGAGATCTCTCGGGACGGCACTGTGTTCTTCACTGACTCCAGCAGCAGGTGGGGCAGGAGGCACGTCCGCTACGAGGTCATTGAGACCAACAAGCTGGGACGTCTCCTGAGTTACGACCCGGAGACGGGACGTGTGAAGACGCTGTTGGAGTCCCTCTACATGCCCAACGGCATCGCCTTCTCACCTGACGAGGATTTCCTGCTGATGGCCGAGACCAGCATCGGCCGAATACTCAGGTATTGGTTGAAAGGACCCAAGGCTGGCACCAAGGAGGTTCTCATGAATAACATGCCTGGTTACCCTGACAACATCCGGGCGAACGACCGTGGCACGTTCTTCGTGGGCATCAACACCATCCGATTCCCTGGCCAGCtcttccctcccttcctggaCCTGATTGGTCCCTATCCGGCAGTGAAGCGATTCATGACTAAGGTGATTCCACTGGGCTGGTACAGCATACTGCTACCCAGGTACGGTCTGGTTCTGGAGCTGGGCCAGGATGGGGAGATTTTGGACAGCCTGCACGACCCGAACGGCAGCCTTACCTGGGCCGTCAGTGACGTCTTCCAGCACGACGGCCGGGTCTACCTGGGCAGCACCGACCTGCCCTTCCTGCCCGTCCTGGAGGAGCCCAGATAA

Transcript

AAFF_T00077950

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF03088	Str_synth	Strictosidine synthase	Repeat	Interproscan
PF16517	Nore1-SARAH	Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain	Domain	Interproscan
PF20067	SSL_N	Strictosidine synthase-like, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR011524	Domain	SARAH domain	Interproscan
IPR018119	Domain	Strictosidine synthase, conserved region	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10426	STRICTOSIDINE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0012505	Cellular Component	endomembrane system	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0016844	Molecular Function	strictosidine synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-