Gene detail

Detailed information of KAJ8385259.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8385259.1	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	AAFF_1.1_unplaced_255	910182	928634	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00191360

ATGGCAGCAGCCGGGCCCTGCCAGAGGTCGCTGAGAGAGCTCCGGGTTCGCCTGGTAGACCAGCTGGAGGAGCACATCGGCTCCCTCGCTGAGCAGCTGCTCCTCAGGGAGGTCTTCACCAGGGATGACGGCGAGGATGTGCTGTGTGAGCGGGGACCCCGCGCCAGGGTCAGAAAAGCCCTGGACATCCTGGACTGTAAGGGAGAAGCGGCCGCCAGCACGTTCCTCTCACTGTGCGGCCATCTACAGGGGGAAGGGAGCCAACCCGCTCACCAAGCACAGTCAGTCGACTACTGCAAAGTGATTCAAAAGCACAAACAGACTCTGAAGCGCAGGAGTGCGAGCATGCTGTTTTATAATACACGGCACGGAGAGAAAATTCTCTTCTCTGAACATTATAAGATCCTGCACGACTTCGGGAACGATCAGGCATACTTGAACTTTGACTTTGTGATCCAGCTGACCTTCAGGGACATGAATTTGATTAGCAAGCCCATAAGCCTCAGAGAGCTGGTTCTACGCAAGAATGGGCACCTGGCCAAAGAGTTGGATAACATCTTTACCAATGACGACAAGCTCTTGATTGTGCTGGACGGGTTTGATGAGTTTAAACACTACAGAGGGTGCGATGTGGAGGAGTTTGTGACAGAGGAGGATCAGGAAGGAGAGATGGTTCAGATTTTCGCCAGCCTAATGCAAGGGGAGCTCCTTCCAGAGGCCTCTGTGCTGCTCACCACCAGACCCACAGCCATCAGCTACATCCCAATTGGCTGCATTGACTGCTTCGTGCTCATGACTGGCTTTTCTATAACCGAAATCAGGGATTTCTTCCTGAAGTACTTCCAGGAGGAGGGCCTGGCACTCAGGATGTTCGAGGTGGTTAAGGCCAATGACCTGATGTTCACCTTGTGCTACATACCAGCCTTCTGCTACATTGTGTGCAGCATTCTGAGGGACAGCGGTGGCTTCTccaacaagagccccaggaccatgACAGATATCTACACACAGTACCTGGTGGCCTTGCTTAGGTCTCACACTCAGAGCAGGGCAGAGTCGCCCCGTGACCTCGGTGCTGGGGGCGAATGCTCGGATCAGCTGTCAGAAACTGTGCTGGACTTGGCCCGACTTGCCTACCTGAATTTGCTGGACCACAAAACCCTCTTCTACAGCTGCACTCCCGAGGTGCAGCGGCTGGCTAGCTGCGACCTGGTCAGCACCTTCCTGGACAAGACGTCGGTCCAGGAGCCAGGCTGCACTGAGGACGTGTACTCCTTCACGCACTTCACCGTCCAGGAATTCTTTGCCGCGCTCTACTACGTGCTGGAGGAGAACCCTTCACCAGACGTCCTAGAGGCCGAGGTCATTCACGGACGAGAGGCGAGCACCGGGTATCTGGACCTGTTCAGACGGTTTCTCTCTGGCCTCCTCTCTGAGCGGAACCAGCAGCTGCTCTCCAGGCATATGCCGATGGGGAAGGGCAGCAAAGCAGAGTCCTACCTGCCCAGGCTCCTCAGAGACACGCAGAGCCTGTGTGAGGATGGGGCCTTTATTATGAACCATCTGCACTGCTTCTTTGAGCAACAAGAAGACTCCCTGGCTCAGCAGGTTCAGCCCAAGGTTCTGCGCATCAATGTCAGCGacaaccccctctcccccacagaCCTCGGAGTGATCAAGTACTTCCTGAACCTGATGGACGGGAATATCTCAGAGCTGGACCTGACTGGGACCAACATGAGCACGGAGTCTCTGATGGATCTGAAGCCCTACCTGTTGAGGTGTGAGAATCTCTGgctcGGAGAAAACAATCTTGACATTGAAGCAATGCAGGTCCTGGCTGAAGTATTACAATCCACAAAGAATATGATGCACCTTGGTCTAGGTTGGACAAACATTGGCGATGAGGAGTTGCTGGTTCTATCTGAAGCCTTAAGAGCAAATCAAATACTGCAGGAACTATGGCTTGAGGGAAACCACATTACCTTCAGAGGCCTGTCAGCATTAACTGATGTGACTCAGTTTTCTCTGCGTAAAATAGTTGTCATTTGGAATGATGTGAGTGAAGAGGAGGCTGACAAGCTCAATAGTATCTGTCACAGAGAGTGCTTCTTTGCTGGCTTCACAAATGAGGACACATGGGAAGGTTGGGGCGACTGGGTCCTTCACAGGTGCGAGGTCAGCAATGATGAGAAGCTGGTGACTTTTCTCCACAAGCTGCTGGCAGATGTGAAGAAGCAGGTGGAGTTCTGGTTTGGGGATGTCAACCTCCACAAGGACAGGTTCCTGAGGCAGCTGGTTGAGCAGTCGAGGGATGGATATGTAGATATTTCTGTGTTAACCACCTTCAACCGGATGAAAAAGATGACCACCGATGTCAAGTTGATTGCAAGGGCACTAAAAAATTCATCTGTTGTTGAGGTGAACCTAGAGGGAACAAAAATAAGACGACAGCGTCCAATTGGAGAGGATCCGAAAAATGTGGATGAGCGCACCGTCTATGTGGAACTGCTCCCCAAGAACGTAACTCACAGCTGGATAGAACGGGCGTTCAGCAAGTGTGGGAATGTAGTTTACATCAGTGTCCCTAGGTATAAGTCCACTGGACAGCCGAAGGGCTTCGCCTTTATTGAGTTTGAGAAAGTGGAACAAGCACAGAAAGCCATAGAGATGCTGAATAACCCTCCTGAAGATGCACCCAGGAAGCCAGGCATCTTCCCCAAGACCAAGAAGAACAAGCCTCTACCCCTCCCATACTCGGAGGACACTGCTCACGaagagaaaaagaagaagaagaggaagaagtcCCGCAGTAGTCGGAAGGAGAGCACCACACAGCAGGCGTCCGAGACCAAGGAGCAGGAAGCCAGGGCGGAGGCGGAGCCGTCCGACAGGAAGAGGAAACGCTCGACGGAGGCCTCTGAGTCCCAGGCCCCTGACGCGCCAAAGACCCTGGTCAAGCGGGAGAAGAAGAGGCGGAGGTCTCGGAGCGAGGGCTCCGCGGGCGACACCCAGGGACAGGACGAGATGCCGTCCAAGATGAGGAAGATGAGCGAGGTAGAGGAGGACCCCGGGGAAAGAAAGGAGGCGAAGTCTGAACTCAAAGAAAGTTCCGCTGAGGgtgagaagaaggagaaggagaaagaggaagaagaggaggaggaggaggatgggaaGAAAGACGACTCGTTGTTGAAGgccaagaggaagaggaagaagaagcaCAAGGAGCGGCTGAAGATCGGCGAAGAGGTCATTCCCCTCCGAGTGCTCTCCAAGCAAGACTGGATGGACTTGAAGCAGGAGTATTTGAAGCTGCAGAAACGCAGCATGGCTACTCTGAAAAAGTCCATGGTCACTCAGAAGGGCAATGGAGAATTGGAGGTTGACCCCAGCGTGCAGGGCAAACAGACTGCTGCCACAAACGATAAACAGGAGCGTGTATGTGACAAAGAAACTTCCCTCGGCCCCCAGTTTGAGAGTGGAGTCATTGTGAAGATCACACACAGCCAACCGCTTCCAGGAAGGAAGTGCATCAAGGATGCCCTGTCGGAGGTTTCTGCCGTGGTGTACGTAGATATACTGGATGGGGATGCAGAGGGGCACGTCCGTTTCAAGACCCCCGAAGATGCCAAGGCGGTGATCACGGCTCGCTCCGAGATCcaaaagaagcacagctggaaaATGGAGATCCTCTCTGgtGATAATGAGCAAAGATACTGGCAGAAGATTTTAGTGGACCGACAAGCAAAACTTAATCGTCCAAGGGACAAAAAACGAGGCACAGAAAAGCTGATTGCCAAGGCAGAGAAGATAATCATAGCCCGGGCAAAAGAGGCAAGTAAGCACATCCGTTTCCTGGAAGACTGA

Transcript

AAFF_T00191360

CAAGATTTGTATCAAGCATGAATCTAGCGTCCAAACCActtttcctgttttgttttgttttggggagtttttttgttgaaaaaggtACTTGCAAAATCATTCCTTCCACTGCTTAATGACTCGCGCCGGGAGAATGCGCCTTTTGTGAAGTACTCCAAGGAAGCCTCTGCAGCTTGTTTCAACCAGACTCACGCTAATGGCAGCAGCCGGGCCCTGCCAGAGGTCGCTGAGAGAGCTCCGGGTTCGCCTGGTAGACCAGCTGGAGGAGCACATCGGCTCCCTCGCTGAGCAGCTGCTCCTCAGGGAGGTCTTCACCAGGGATGACGGCGAGGATGTGCTGTGTGAGCGGGGACCCCGCGCCAGGGTCAGAAAAGCCCTGGACATCCTGGACTGTAAGGGAGAAGCGGCCGCCAGCACGTTCCTCTCACTGTGCGGCCATCTACAGGGGGAAGGGAGCCAACCCGCTCACCAAGCACAGTCAGTCGACTACTGCAAAGTGATTCAAAAGCACAAACAGACTCTGAAGCGCAGGAGTGCGAGCATGCTGTTTTATAATACACGGCACGGAGAGAAAATTCTCTTCTCTGAACATTATAAGATCCTGCACGACTTCGGGAACGATCAGGCATACTTGAACTTTGACTTTGTGATCCAGCTGACCTTCAGGGACATGAATTTGATTAGCAAGCCCATAAGCCTCAGAGAGCTGGTTCTACGCAAGAATGGGCACCTGGCCAAAGAGTTGGATAACATCTTTACCAATGACGACAAGCTCTTGATTGTGCTGGACGGGTTTGATGAGTTTAAACACTACAGAGGGTGCGATGTGGAGGAGTTTGTGACAGAGGAGGATCAGGAAGGAGAGATGGTTCAGATTTTCGCCAGCCTAATGCAAGGGGAGCTCCTTCCAGAGGCCTCTGTGCTGCTCACCACCAGACCCACAGCCATCAGCTACATCCCAATTGGCTGCATTGACTGCTTCGTGCTCATGACTGGCTTTTCTATAACCGAAATCAGGGATTTCTTCCTGAAGTACTTCCAGGAGGAGGGCCTGGCACTCAGGATGTTCGAGGTGGTTAAGGCCAATGACCTGATGTTCACCTTGTGCTACATACCAGCCTTCTGCTACATTGTGTGCAGCATTCTGAGGGACAGCGGTGGCTTCTccaacaagagccccaggaccatgACAGATATCTACACACAGTACCTGGTGGCCTTGCTTAGGTCTCACACTCAGAGCAGGGCAGAGTCGCCCCGTGACCTCGGTGCTGGGGGCGAATGCTCGGATCAGCTGTCAGAAACTGTGCTGGACTTGGCCCGACTTGCCTACCTGAATTTGCTGGACCACAAAACCCTCTTCTACAGCTGCACTCCCGAGGTGCAGCGGCTGGCTAGCTGCGACCTGGTCAGCACCTTCCTGGACAAGACGTCGGTCCAGGAGCCAGGCTGCACTGAGGACGTGTACTCCTTCACGCACTTCACCGTCCAGGAATTCTTTGCCGCGCTCTACTACGTGCTGGAGGAGAACCCTTCACCAGACGTCCTAGAGGCCGAGGTCATTCACGGACGAGAGGCGAGCACCGGGTATCTGGACCTGTTCAGACGGTTTCTCTCTGGCCTCCTCTCTGAGCGGAACCAGCAGCTGCTCTCCAGGCATATGCCGATGGGGAAGGGCAGCAAAGCAGAGTCCTACCTGCCCAGGCTCCTCAGAGACACGCAGAGCCTGTGTGAGGATGGGGCCTTTATTATGAACCATCTGCACTGCTTCTTTGAGCAACAAGAAGACTCCCTGGCTCAGCAGGTTCAGCCCAAGGTTCTGCGCATCAATGTCAGCGacaaccccctctcccccacagaCCTCGGAGTGATCAAGTACTTCCTGAACCTGATGGACGGGAATATCTCAGAGCTGGACCTGACTGGGACCAACATGAGCACGGAGTCTCTGATGGATCTGAAGCCCTACCTGTTGAGGTGTGAGAATCTCTGgctcGGAGAAAACAATCTTGACATTGAAGCAATGCAGGTCCTGGCTGAAGTATTACAATCCACAAAGAATATGATGCACCTTGGTCTAGGTTGGACAAACATTGGCGATGAGGAGTTGCTGGTTCTATCTGAAGCCTTAAGAGCAAATCAAATACTGCAGGAACTATGGCTTGAGGGAAACCACATTACCTTCAGAGGCCTGTCAGCATTAACTGATGTGACTCAGTTTTCTCTGCGTAAAATAGTTGTCATTTGGAATGATGTGAGTGAAGAGGAGGCTGACAAGCTCAATAGTATCTGTCACAGAGAGTGCTTCTTTGCTGGCTTCACAAATGAGGACACATGGGAAGGTTGGGGCGACTGGGTCCTTCACAGGTGCGAGGTCAGCAATGATGAGAAGCTGGTGACTTTTCTCCACAAGCTGCTGGCAGATGTGAAGAAGCAGGTGGAGTTCTGGTTTGGGGATGTCAACCTCCACAAGGACAGGTTCCTGAGGCAGCTGGTTGAGCAGTCGAGGGATGGATATGTAGATATTTCTGTGTTAACCACCTTCAACCGGATGAAAAAGATGACCACCGATGTCAAGTTGATTGCAAGGGCACTAAAAAATTCATCTGTTGTTGAGGTGAACCTAGAGGGAACAAAAATAAGACGACAGCGTCCAATTGGAGAGGATCCGAAAAATGTGGATGAGCGCACCGTCTATGTGGAACTGCTCCCCAAGAACGTAACTCACAGCTGGATAGAACGGGCGTTCAGCAAGTGTGGGAATGTAGTTTACATCAGTGTCCCTAGGTATAAGTCCACTGGACAGCCGAAGGGCTTCGCCTTTATTGAGTTTGAGAAAGTGGAACAAGCACAGAAAGCCATAGAGATGCTGAATAACCCTCCTGAAGATGCACCCAGGAAGCCAGGCATCTTCCCCAAGACCAAGAAGAACAAGCCTCTACCCCTCCCATACTCGGAGGACACTGCTCACGaagagaaaaagaagaagaagaggaagaagtcCCGCAGTAGTCGGAAGGAGAGCACCACACAGCAGGCGTCCGAGACCAAGGAGCAGGAAGCCAGGGCGGAGGCGGAGCCGTCCGACAGGAAGAGGAAACGCTCGACGGAGGCCTCTGAGTCCCAGGCCCCTGACGCGCCAAAGACCCTGGTCAAGCGGGAGAAGAAGAGGCGGAGGTCTCGGAGCGAGGGCTCCGCGGGCGACACCCAGGGACAGGACGAGATGCCGTCCAAGATGAGGAAGATGAGCGAGGTAGAGGAGGACCCCGGGGAAAGAAAGGAGGCGAAGTCTGAACTCAAAGAAAGTTCCGCTGAGGgtgagaagaaggagaaggagaaagaggaagaagaggaggaggaggaggatgggaaGAAAGACGACTCGTTGTTGAAGgccaagaggaagaggaagaagaagcaCAAGGAGCGGCTGAAGATCGGCGAAGAGGTCATTCCCCTCCGAGTGCTCTCCAAGCAAGACTGGATGGACTTGAAGCAGGAGTATTTGAAGCTGCAGAAACGCAGCATGGCTACTCTGAAAAAGTCCATGGTCACTCAGAAGGGCAATGGAGAATTGGAGGTTGACCCCAGCGTGCAGGGCAAACAGACTGCTGCCACAAACGATAAACAGGAGCGTGTATGTGACAAAGAAACTTCCCTCGGCCCCCAGTTTGAGAGTGGAGTCATTGTGAAGATCACACACAGCCAACCGCTTCCAGGAAGGAAGTGCATCAAGGATGCCCTGTCGGAGGTTTCTGCCGTGGTGTACGTAGATATACTGGATGGGGATGCAGAGGGGCACGTCCGTTTCAAGACCCCCGAAGATGCCAAGGCGGTGATCACGGCTCGCTCCGAGATCcaaaagaagcacagctggaaaATGGAGATCCTCTCTGgtGATAATGAGCAAAGATACTGGCAGAAGATTTTAGTGGACCGACAAGCAAAACTTAATCGTCCAAGGGACAAAAAACGAGGCACAGAAAAGCTGATTGCCAAGGCAGAGAAGATAATCATAGCCCGGGCAAAAGAGGCAAGTAAGCACATCCGTTTCCTGGAAGACTGAAGCTTTCTCAACGTCGTCTCCAGCTGACGATTCCCATGGCTGCGTGCAGGACTCTCCTCAGTTTGAGTCCTCATTGTTTTTATACTACTTTCAGGTGACTGTGTGCAGTTTTCTGGGGCCTAACATGGCTAGGCTTCTTCAATATTTTGTTGATGTCTCTTGAGtttgatatatttttcttttacccTTAGTGATGTGTTTGAGTGatgcagatttttttacatGAGGTTCgccattttctttatttgtgttttttttttttttttttttactggaggATGTAGTATTGAGCACGTATGCAGGTGAGAATTTCAGAACGTTATTATATATTGATAGAAGGAAAGTCCATATGTTGGTACAGCAGGCATACTATGGTTTAGAAATTATTCAAAAATGTTGTGGAAAAAATGGTTTTTGTAAATCGGTGCACATTGAACAATTTCAGcgaggtgaaaaaaaaaaaaagcttttttaaaaacttttttagttttaatttgtttccttTAGTTCTAATCGAAAATGTGGGAAAGGAAATCAAGATCTCATTCTGTAATGTGtgaatatttgtatataatgtAAATATGGCGGGTTGTGcgattcttttgtttttgtggccCTCATCACCTCTCTTACCAAGTTGAtgaatttcattatttttaaatgaataaacagcCCTACTAAGTGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF05383	La	La domain	Domain	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF08777	RRM_3	RNA binding motif	Domain	Interproscan
PF17776	NLRC4_HD2	NLRC4 helical domain HD2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001315	Domain	CARD domain	Interproscan
IPR002344	Family	Lupus La protein	Interproscan
IPR006630	Domain	La-type HTH domain	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR034887	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR034910	Domain	LARP7, RNA recognition motif 2	Interproscan
IPR034946	Domain	La-related protein 7, La domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR041267	Domain	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Interproscan
IPR050637	Family	NLRP family, innate immunity and inflammation regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45690	NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-