Gene detail

Detailed information of KAJ8384234.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8384234.1	RHO FAMILY GTPASE	AAFF_1.1_unplaced_275	99368	115859	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00206950

CTTTTCTCCATTTCCGTTCAAGTTTACGTCACCTGAAAGTTTGACGTTACGTACTACGCAACGTGCCCCTGTGGTTTTGACTGAGCAACCCCGAGTGCGAAGCTGCCAACGCCCGGCATAGTGGCTGTTCAATTCAGAGAGGAAACGATCTTGAATGAGCCCAGTGGACCCTGACAGAGTGCAGCTATGCAGACGATTAAGTGCGTTGTAGTCGGCGATGGTGCCGTGGGTAAAACCTGCCTCTTAATCTCGTACACAACCAACAAATTCCCCTCCGAATATGTACCAACGGTGTTTGATAACTATGCAGTAACGGTTATGATTGGAGGGGAACCGTACACCCTAGGACTATTTGACACTGCAGGTCAGGAAGACTACGACAGATTACGACCCCTGAGCTACCCCCAGACCGACGTCTTCTTAGTTTGTTTCTCCGTCGTTTCACCTTCTTCGTTCGAGAACGTTAAAGAAAAGTGGGTGCCAGAGATCACTCACCACTGTCCAAAGACCCCGTTCCTGCTGGTGGGCACGCAGATTGACCTGAGAGACGACCCCTCCACCATCGAGAAGCTGGCCAAAAACAAGCAGAAGCCCATCACCCCGGAGACGGCCGAGAAGCTGGCCCGGGACCTGAAGGCGGTGAAGTACGTGGAGTGCTCCGCCCTCACGCAGaaaggACTAAAGAACGTTTTTGACGAGGCGATATTGGCCGCACTGGAGCCTCCGGAGCCCAAGAAGAAACCCAGATGTGTGCTGTTATGAGcagacccctccccccacaccccccacccctctctcctcccaccccgcacccccctcccctctcccttacCCAGTTCATGATGGGCAGTCAGTTTCCTTCTCTAAATATGAGTTTCAGTTTTCAATCGACAGTAAAGACGCAAAGAAATCATCAGTGAACCTGCAACACAACCACAGGGGACAAAAGGAAAAGATTTGCtaccttttgttgttgtttttctgtccCCGTTAATATAACGCTGTCGGCCTCCGTTCCCCTCCGGTGGCCCATGTGTCAGAATCACGATCCTGTCATTCAGGGCTGTTTCTGTTTCGCAGGGACTCTGCCCTTCTGTGACAGGGTTCAcccggggggttggggggatgtGTTTGTGATCCGAAGTGCCACATTGgacaacatatacacacacacacacacacacacacacacacacagacacacacacacacacatgcgcgcataAATAGCAGCTCATTGCAGGGGTTGGGCCAAGTTGTAACAGCAGTCCTCATAGGATTCTATGAAATAAATTAGGGTATTGATTCCTAAcgattgtatatatatatatatatatatatatatatatgtatatatatatacacactcaacacacacacacacacacacacatatatatatgtatgtatgtatgtatgtgtctgtgtaacAATGAAAATTAAAGTATTGATTTCCTTGTCTCAGCTCCCAGCCCATGTCAGTggttatgtactgtatgtcaatATTAACACGATAGTGTAAGCATTTCAAAAGAGGCCTCCAGCTTCACTTGGAGGaggttgggtttttttcttcgtGTTTTTAATGGTAAATGCCTCCGCTCCCTAAAAGAGAAAAGGTGGACGAAGAGAAAGGATGTCTGTCTATTGGCAAACAAGCGAGCCTCGGTCAGCAGCTTCACGATTCGCCTTCACCTCTTCAGACCACTTGAAGGAGATGCACAGTGAGAGActagtattttattttctgagaagaatttaatgttttttttgtgtttttgttttttaaacgcatCTTATAAGATTTTAGGCGATGTGTGAGACGGACTGAGATATTTCTACAGCAGGGAACTTTGACAGTGTTAGCTGGAGGCGTGTCTGGTGCCAGGGACCAAGCAGGCTGTTGAGCAGAAGTTAAAAGCGATTTGGGACAAACCTCTGGTTCCTGTGGTTAGAgtcacataataataatgtacgctggtaaaaaaaaggaagagaaaaaagagatgTAGACtccagtgttatgcatttttaccaagcttctgtttttttttgttttttttccttttgtttttttttgcggtTTTAATTTTGTAATGAACTTTTTCACGCCTGTCACCAGCTAGATCTTATAGCTTTTTTTTGGTGGGAAACCAAATTATTGATGTCttgtttttgagtttttgttttgtttttctttttgtatgtgcgttattttcaaaaaaatattattaaacttCTACTTTAATCGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR003578	Family	Small GTPase Rho	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037874	Family	Cdc42	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0032488	Biological Process	Cdc42 protein signal transduction	Interproscan
GO:0043197	Cellular Component	dendritic spine	Interproscan
GO:0099563	Biological Process	modification of synaptic structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-