Gene detail

Detailed information of KAJ8383808.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8383808.1	TOLL-LIKE RECEPTOR	AAFF_1.1_unplaced_285	850946	868631	+

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00214950

ATGTTGAGACTTGGTCTGACTCTTTTTATGACTTGGCTCTTTCAATGCGGTATTTTGGATGAGAGCAGGGGCAGAGTTGGGGCACGGATTTCGCGACACTGTGTGACTTTCAAGGAGAACCTCTCTCGGGACATTGCAGGGTCTGTAAGTTGCTATCACTTGCCAGGCCTGGGTCTTTATGCCGAATGCAGTGACGTGACTGACTTTAAGTCAAACCTCCTGGATGTTTCGCCTGCCGTCCGGTCTCTGTGCCTCTACCATCGTGCTACTACCCTCCCCTTGCGTTCGTTCTCACAGTTTGAAGCTTTAGAGGTGTTGAGTGTGGATGGTTATCTAGAAAAGATTCAATCTGGGGCATTTTTAGGATTGGTAAATTTGAAGTTTTTGCATCTCCAATTGTCTGCCGATTTCTGTAGAGATGTGAGTTTGGGTTCAGGAGTGTTCCAAGATTTGCGCAGCTTGGAGGAACTCTATATTTATGGCTTGTATTTTGCCAAAGTGCCAAAGTCTGTGTTCTTCCCTGTAGTGCGGTTGTCAAAATTGCAGCTTACCAGAAACTGCATTGAAGACATTGGAAAGGTTTTTTGTCAGCTGCCACTGGGAATGTCACGTTTGAAAACTTTGAATTTGCACAATAACAACATTACCGCTATTCGAAATCAAGGATGTGCAGGATCTGGGAGCTGGCCCACTCCAGTTTTGTCTGGAATTAAGAATTTGGATCTGAGTGCCAACCCCATTAATGTAATTGAACCAGATTCTTTGAAGATATTTCAGAACCTGACCAGCCTTAGATTGGGTTTCCAAGGGCAGTGGCTGGGCAGTATTTGGGAATCTGGAATAGGAAGAACGAGGGAGGTTTTTCTGGAAGGTGAATACTATAAAAAACTATCTTTTACCTTTCAAGATGCATGTAGCCTTGTCTCTAAATTGGGAGTAGAATCCTTAAAGATTGAATATTCCGTAGTGGATGATTTGTCTGTAGAGACGATACAAAAATGTGGGGATGGGTTGAAAAGGTTGACCATGGGTTTCAGTGAAATAATAGGTCTAGATTTGGGGTTCTGGGTTAGTATAGATGGGATGGAAGTTCTGGAAATGACTGGAATGAAACAGAAAAATGCCTCATTCTGCACTGCTGGAAAAGGCAAGGTCTGGAACATCACAACCTTAAACTTGCCCAAGAATAGCCTCACTGCTGTAGAGGAGAATCAGTTTGCTTGTATGCCGCTCCTAGAGCAGCTTAATTTGGAGAAGAACTCAATTGAAAATCTGGCAAGTGGTGCTTTTCATGGGTTACAGCGGCTGAGGATCCTTAGCCTGGTGGGTAACCATATCAAACGGCTGGTGAAATCAGATTTTGAACATCTTGTAGCTATAGAAGTGTTGCTATTGCACGAAAACAAGATAGAACATATTGCAGAGGGTGTGTTCAGTAAACAGAGCGCTTTGCAAGAGCTGACTCTTGGAACACTGCAGTACATCTATGAGCTGTATCTCCAGATGCTCTTTTACGGATTCCCATCGAAATTGCGTCGCCTGAGGATAGACGCTGGATATGGGACGTACATTTCAGTGGGGAGCGCAATCTCACCTGATGCCCCTTTTGATCTGGAGCTGAATGGGGATTTACTGGGGTTTATTGAGTGCGAGAGTCCCGTGTTCCGGGATGTGCGGGAACTGAAAGTCGGCAATGGTCAGTTTACCTGTTTCACTTATTTTATGGTGCCACACTTCCCCAATCTGGAATCCTTTGAGTATCATGGTAACCCAGAAAAGACTCTCATCACATACACGGGGATCAACCAGCTCCACAAACTGAGGCGTCTGAAGCTCACCAACCTCAACTTCATCAACCACTCGGACCCGGGCTTGACCTTCCGAAACCTCACCAATCTGGAGACCCTGCTGCTGCTCAACTGCCGCTTCAACTTCCTCACCAGAAGCATGTTCCAGGACCTGGGGTCCCTCCAACTTCTGCGGCTCTACAGCGACAACCCGCTGATCATCCTGGAGGGGGCCTTCTACCCACTGACCTTGCTTTCGGTCCTGGCGTTCGATCGCTTGGACTTCCACTGCCAGAATGGGTGGCTCCTGGAATGGATGGAGGGTTCGCAACATATGCAGGCCATCAACCTCCAGAAGCAGGTTTGCATCCTGCACTACCAACGGCTCAACTTCCTGTCCACCATGGAGCGGCTTTGTCAGACGGACGTCTACTACCTGTGCTGCCTGTCCACCGCCACGCTGGTCTTCCTGTTCCTCTCCTTTGCCCTGGGGTACCGGTTTGCCCGCTGGCCCTTCCTGGTTTTGTTCTTCAGAGTTCGGGGCTGGCTGGAAAGGAAGCtggggaagaagaggaggaaaaggagAGTGGGACAGGGGGAAGAGAACGGGAAGGAAGAGGACGGGATGTTTGACGCGTTTGTGTCATACAGCAGTAAAGACGAAGCATGGGTGACAGAGGAGATGGTGCCCAAGATGGagcaagagggggagcccagacTGAGACTCTGTCTGCACAACAGGGACTTTGAGGTAGGGAAGGGCATTGTTGACAACATTGCAGACAGTGTGTACGGAAGCAGGCGCACCGTGTGTGTGCTGAGCCGCCGGTACTTGCGCAGTGACTGGTGTGCCCTGGAGATGCGAGTGGCCACCCATCGCCTGCTGGCTGAGAAAAAACATCGCCTCATCCTCATCTTCCTTGAGCGCATCTCACCCTTTGAGTTGTCTGCATACCACCGTTTGGCCAAACTGACCAAAACCCGCACATACTTGGACTGGCCAGTACACGAGGGGGAAAGAGTGGAATTCTGGGAGCGGCTGCGCAGAAATATTGCTGACAGAGTTGAGGCCTTCTTGCTGATGATGCAGTTTGAGGTGCATGGTGAGAAAGCATACTCCATGAGAGACAGGTGGCGTTCCTCAGGTACCATCAATCCCAGTCTATTCcatactctctctccctctctctgtctgtctctctcgctctccatcTCGGTCTGTCTCTACGCAATGGAATCTGCCATCAGCACGCTTGTCTCCCAGTTCAAGACCTTTGCCGGAAAGGATGGATCCTCTGAAACCCTGAGTAAAGAGGAGTTTCACAGTCTGGTGGTGTCCCAGTTGGCCAACTTTGTCCAGAACGCCAATGACCCAGCAGTGATCGACCAGCTCATGGGCTCATTGGATGAGAATAACGATGGCGAACTGACCTTCCTGGAAATTTCGTGTGAAAGGAACATGGAGGATGCCATTAAGACAGTGGTGGGGGTCTTCCTGAAGTCTGCCAAGGGCAAGGAAAACTTGAAGAAAAATGACTTCAACAATCTGGTTAAGAACGACCTGCAAAACATCATGTCGGACACAGACAACTCATCGGCATTGAAAGAGATGCGCACGAATCTGGATCAAAACCAAGATGGCAAAGTCAGCTTTCAGGAGTTCATGACCCTGGTGGGCTACCTGGCCAGCTCGATGAGTGACCGCCAGACCGGCAAGGAAACACCAGCCGCGGCCGAGGAGCAAGCCTCATAG

Transcript

AAFF_T00214950

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01023	S_100	S-100/ICaBP type calcium binding domain	Domain	Interproscan
PF01582	TIR	TIR domain	Family	Interproscan
PF13306	LRR_5	BspA type Leucine rich repeat region (6 copies)	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013787	Domain	S100/CaBP-9k-type, calcium binding, subdomain	Interproscan
IPR017241	Family	Toll-like receptor	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR026906	Repeat	BspA-type LRR region	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR034325	Domain	S-100	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002224	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0046914	Molecular Function	transition metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-