Gene detail

Detailed information of KAJ8378240.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8378240.1	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	AAFF_1.1_unplaced_326	133026	198351	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00244440

atgcggcgaaACCGTGCCGACTTCCTTCCCAACCTCCCTcaagtggacagccaatcaccaccctctgagcgggactcccagccagagccgggctggcgcagccgggaaaTCAAACCcaacttgcactctgggcgaATTTGCGCACACTCACGCGATTGGCTCTTTGAGACAGAGGCTGAACACTTGACACTCAAAGCGGGCCAAAATGTCACAGCCGGGCAGGCCTACCTCTTAGAGAGTCAATCAAGgagcttggaggaggtggaacGGAACATGGTGCTGAGGCCCAGGGAGTCTTTGTCTGAGATCCGACAGACGTTCGCGGATGACTCACCCATCCATCTCAGCGTGCAATTttacctctctccccccctctcgccTGCTCTCGGTCCCAGCGCTCTGGAGTGGCCCTGTGACTCTCCTGATCCCGCAAAGGCCAAGCCGACTCTGCCCTGCTACACCAGGAAGCGAGCGTCCACCTGCGGATGGCTGTTGCGTACTAAGGTTGGGTGCCTCATCCTGGATGACAAAGGTACCAGAGAAATTAAGACCGCATCTCCCAAAGCTCAGGTGAAGCAGATCATGGAGGAGGCGGTGACCAGGAAGTTTGTGCATGAGGACAGTAGCCACATTGTCTCCTTCTGCGGAGCTCCATTAGCTGTGGTTTCCATGACAACTGTGGCCACCACTCCCCCCTGCGAGCTGAGATGCAGGATTATTCCTGGGAGAGAGCTGGGATCTGCTGTGGAGGCGTGCGTGTTGCATGGGCTGAAGCGGCGGGCAGCAGGGTTCCTGCGCAGCAACAAGATTGCAGCTCTCTTCATGAAGGTGGGGAAGAGCTTCCCCCCTGCTGACGAGCTCTGCAGGAAGGCCCAGGAGCTGGAGCAAATCATCGAGAGCAAACGGAACCAGGTCTCACTGAATGCTGAGAGCACCCGTAAGCTGCCCAAGCTGCCAAACATCTCCCCACAGGCCATCAAGCACCTGTGGATCCGCACAGCCCTCATCGAGAAGGTCCTGGACAAAATTGTGCTCTACCTGGTGGAGAACAGCAGCAAGTTCTACGAGAAAGAGGCCGTCCTGATGGATCCTGTGGATGGGCCCATCCTAGCATCTTTATTAGTCGGTCCATGTGCATTGGAGTACACCAAGATGAAGACCGCCGACCATTTCTGGACGGACCCCTCCGCTGACGAGCTGGTCCAGAGGCATCGTATACACAGCGCTCACTGCCGGCAGGACTCCCCCACCAAGCGCCCCGCCCTTTGTATCCAGAAGAGGCACTCCAGCAGCAGTATGGATGAGCGCCCCTCACCTTCGCCTTCGGCCCGGGACTATGTGGAGTCGCTGCACCAGAACTCCAGAGCCACGCTGCTTTTTGGCAAGAACAACGTCCTCGTGCAGCCGAGGGATGACATGGAGGCTATCCCAGGgtacctctctctccatcagacCGCCGACATCATGACCCTGAAGTGGACACCCAACCAGCTGATGAATGGTTCTGTAGGGGACCTCGACTACGAGAAGAGTGTTTACTGGGACTACGCTATGACCATTCGCCTGGAGGAGATCGTCTATCTGCACTGTCACCAACAGGATCTCATGTAtcctgcacgtgtttccttagTGGACAGTGGGGGTACAGTGGTGCTGGTGAGTCAAGATGGGATCCAGCGACCCCCGCTGCGCTTCCCCAGGGGGGGTCACCTCTTGCAGTTCCTGTCCTGCCTGGAGAACGGGCTCCTCCCCCACGGTCAGCTGGACCCGCCCCTCTGGTCCCAGAGAGGAAAGGGGTCCTCGGAGTCGGCCTCCGACAAAGAGGAGGACGAGGCCACGGACTACGTCTTCCGGATCCTGTTCCCCAGCAGCCAGTCGGAGTTCGTTACCATTGTCCACCGTTCACCCCCCTCCACTGGCACACGCCCCCTGCCCCGCTCTATCTCCCTGCCCCAGTGGAGACGTCCCCCTCAGAGGTGTCGGACTCTGGTGGTCCCCAAGCGCTCCTACAGCTACCCCGGACCCCCAGGCTCTACCGTGCATGGCTGCACCCCAGACCTGGTGGACCAGGGTGCGACCATGTGGCAACCCACCCCCAGGAAGTCCTCGTGTTCCTCCTGCTCCCAGAGTGGGTCTTCAGACGGAGGACCCCCCAACGGGTGCAACCAcgagagGGCCCCTCTGAAGCTCCTCTGTGACAACATGAAGTATCAAATCATTTCCCGGGCTTTCTACGGCTGGCTGGCTTACTGCCGTCACCTGTCCACTGTGCGCACACACCTGTCCGCGCTGGTCAACCACACCATCGTCGACCCGGGCATCCCGCACAACGCCTGTGGGGGTCTCTCCATCGAGGTCTGGCAGAGGTTTATGCAAGACTGCACCGCCTATGAAGAGCAGGAGCTGCTGCGCCTGGTGTACTTTGGGGGAGTAGACCCCTCACTGCGCAAGGAGGTCTGGCCCTTCCTGCTGGGGCACTACCAGTTCGGCATGTCCGAGGTGGAAAGGAAAGAGGTGGATGAGCAGGTCCGGGCCTGCTATGAGCAGACCATGAGCGAGTGGCTGGGCTGTGAGGCCATAGTGAGGCAGCGGGAGAAGGAGCAGCACGCCGCGGCGCTGGCCAAGTGCTCCTCCGGGGCCAGCATAGACAGCACCATTCAGAGGATGATGCATCGCGACTCCACCGTCAGCAACGAGTCCTctcagagctgcagctcagacagacagagccacGCCCGGCTGCAGAGTGACTCCAGCAGCAGCACACAGGTCTTTGAGTCCGTGGAGGAGGTGGACCAGATCGAGATGGAGCCCAAGGGTGACGAGACCAAACAGGTTCCCAAAATCCCCAACGGCGCCCTCCCCAATGGCACAACCTCCCCCGACTCAGGACACCCATCCTCCCGCAACTTCTCCATCACCTCCGGCTTGTCCGACCGCTCACTCAGCACAGAGGACAGCGCCGCGCCCGAGGCTGCCATCAAAGCCGCCGCCGCCACCGCTGCCCCCCAGCAGCCCCCAGCCCAGTCTGGCCCAGTTAAGACTGAACAGGCCACAGGGGTTTCCCCCAGCTCCAGCCCCACCCACAGCACCAGGTCACAATTCCAGTCCAATGGGAAAGAACTTCAGGCTAAGGACAAATTGGAGAAAGTCTCCAAATCTCCTGAAGTAAAGGAGAGCAAGGCAGTAGACCCAGAGGATTGCAAGGTCCCACAAATGGAAAAGGTAAAATTACCTGGAACAGTGGAGCTGAAGGATGTGGAAACGAAAGAGGTAAAATCTCCAGAACTGGAGGCTAGGgcacaggaaacagaggagaacAAGGCAGCAGAAACAGAAGTGGTGAAATCACCTGAGACAGAGGATGTCATTGCTCCTAAAACAGAGATAACATCACCTAAAACAGAGGTGGTCAAATCACAAAACAGAGGAGAAGCAGTCAAATCACCTGAAACAGAGGAGGTCAAATCACTTGAAACAGAGGAAGTCAAATCATCTGAAACAGAGATAGCATCCCCTGAAGCAGAGGTAGTCAAATCACCTGAAACTGAGGAGGTCAATACTCTTGAAAAAGAGGAGGCCATGGATGTAGAAATGAAGGCAAAATCTCCAGAAATGGAGGAGGCTATGGTTCCACAAACAGAGGTGACCAAGTCACCAGAGACCGAAGTTGTCACCGAAGTGGGACCTGAAACGGAACTAGTCAACTCTCCAGAAAAGGAGGGTGTAGAAGTGAAGCAGGTGAAGTCTCCAGAATTGAAGGAGGGTAAAGTTACAGAAGCAGAAGTAGATGGAGCTCCTGAAACTGAAGAGGTAAAAACTCTGGAGGTAAATGATGTGGAAACGAAGGGGGTAAAATCTCCAGACAAGGAGAACGCCAAGGGTTCAGAAATGGACAGGGACAAGACTCCAGAAACGGAAAAGGATAAGACGCCAGAAATGGAAGAGGTTAGGACCCCCGACGTAGAGGCTTGTGAACCAGATGAGGGTCGGAGGACAAGCGTAGCTTCCAGCACTGTAGATACCAGCGAGGCTCTACTCACCACAGAGTCCGACGAGTCTCCGTCTGCCATAGAAATGGAGGAAATCATCATGGCCAAAACTTCAGTTATCTCTTGGGATAGGAAAGGCCCTTCTATGTGTACGGGTGGCTCCTTGGCCCTAGCAGCTCCCCCGCCACTGGGAGAGGCGGCGATGGTGGTGGGGCTTCCGATGCTGGAGCTACGGCTGGAGGAGGACGGGGACAAGCCCAGCCCAGAGGGGACCGAGTCAGTCCTGTCAGAGGAACCCGAAATGGAGAGCCTCTTCCCCCAGTTTGACTCCCTGGTCGTTGCCGGGGAGATGAAGAACGAGGCCGCCTCCCCCGTCTCGTCCATCGGGACCACCTACTCTcaAGAGCTGCTGGACATGTACACAATTAACCTGCACCGCATCGAGAAGGACGTCCAGCGTTGTGACAGGAACTACTGGTACTTCACTCCTGCCAACCTGGAGAAACTGCGCAACATCATGTGCAGTTACATCTGGCAGCACCTGGAGATTGGCTATGTACAAGGGATGTGTGACCTGCTGGCACCACTCTTAGTCATTCTGGATGATGAGGCCCTGGCTTTCAGCTGCTTCACTGAGCTCATGAAGAGGATGAACCAGAACTTCCCTCACGGAGGGGCCATGGACACTCACTTTGCTAACATGCGCTCCCTCATCCAgATCCTGGACTCTGAGCTGTTTGAGCTCATGCACCAGAACGGGGACTACACTCACTTCTATTTCTGCTACCGCTGGTTCTTACTGGACTTCAAGCGAGagTTGGTGTACGATGATGTGTTCGCTGTGTGGGAGACCATTTGGGCTGCCAAGTACACCTCTTCTGGCCACTTTGTGCTCTTCATCGCCCTGGCACTGGTGGAACTCTACAGAGACATCATCCTGGAGAACAACATGGACTTCACTGACATCATCAAGTTCTTCAACGAAATGGCGGAGCACCACAACATCAAGCAGGTCCTGACGCTGGCTCGAGACCTGGTGTGCAAAGTGCAGACGCTCATCGAGAACAAAGGCGTCATTACCGAGCCCTGGGGATATGCCGGAGAATCGGTGACAGCACAAGACCTCAAGCAAGAATACGACCAGTGCTTTAATCGCTGGTTCGCAGAGAAATTCCTGAAAGGAGACCGGAGCGGCGACCCCTGCACCGAGATGTTCAAAAAGTATCAAGTGTGTGTTCAGCCGACACAAGTACCCCTAGACCTTGTGGACAAATTGGAACGCCTAGCCTTGGTGGACTTCAGAAACCAGGATGCAGTGGTCTGCTTGGAGAAAGCCATCCGATTCGCTGACCAGCTTCACACAATCAACACAGAGGGGGTAGAACCAATGGATTCAGTTCTCGAGGACAGAGCATTGTACCTGAGAGATGATCATGTGGAAGAGGGAGGCTGTGCAGAAGTGCTACTCCAGCTCTCCAAGAACACTGTGGAGGAGTACTTTGTTGCACCACCAGGTAACATCCCACTcccagagagagaagggagagctGCTGTGCTGAAAGACTCCAGAGTTCTGTCTGGAGAAGCAGATGGCGGGGAGGCGGGCTGTGGTGCTGTGCCGGGATGCGACGAGGAGGGGGGCTATGGCGCGACAACGAGTGGCGAGGGGGTGGTGACTGATAGCGAGGGGGTGGAGATCCACGGCCTTGCGGGAAATGTGTCCGCTGTGGATGGCGTGCTCACCTGGTGTGACCGGAACTCTGTCCTGTCAAGACGGCGAAGAGCGTACTCCATATCCTCTCTCCGCAGGAACTCCACCACCCCTTCCCCGTCCTGCCAGCTGCCGGTGGGGGGCAGGCCTGTGGGCAGAGAGGGTCGTATTCAGCCTCCGAAGGGCCGTTTTCACACTGTCCCGACTCGTTGCGCCTCACTGAGATGGGGACAGGAGAGGCGCGGCCATTTTGTCAGCCTCaagatgctctctctctccgactTTCAAAAGAGTCCACCTTAG

Transcript

AAFF_T00244440

Protein

KAJ8378240.1

MRRNRADFLPNLPQVDSQSPPSERDSQPEPGWRSREIKPNLHSGRICAHSRDWLFETEAEHLTLKAGQNVTAGQAYLLESQSRSLEEVERNMVLRPRESLSEIRQTFADDSPIHLSVQFYLSPPLSPALGPSALEWPCDSPDPAKAKPTLPCYTRKRASTCGWLLRTKVGCLILDDKGTREIKTASPKAQVKQIMEEAVTRKFVHEDSSHIVSFCGAPLAVVSMTTVATTPPCELRCRIIPGRELGSAVEACVLHGLKRRAAGFLRSNKIAALFMKVGKSFPPADELCRKAQELEQIIESKRNQVSLNAESTRKLPKLPNISPQAIKHLWIRTALIEKVLDKIVLYLVENSSKFYEKEAVLMDPVDGPILASLLVGPCALEYTKMKTADHFWTDPSADELVQRHRIHSAHCRQDSPTKRPALCIQKRHSSSSMDERPSPSPSARDYVESLHQNSRATLLFGKNNVLVQPRDDMEAIPGYLSLHQTADIMTLKWTPNQLMNGSVGDLDYEKSVYWDYAMTIRLEEIVYLHCHQQDLMYPARVSLVDSGGTVVLVSQDGIQRPPLRFPRGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGSSESASDKEEDEATDYVFRILFPSSQSEFVTIVHRSPPSTGTRPLPRSISLPQWRRPPQRCRTLVVPKRSYSYPGPPGSTVHGCTPDLVDQGATMWQPTPRKSSCSSCSQSGSSDGGPPNGCNHERAPLKLLCDNMKYQIISRAFYGWLAYCRHLSTVRTHLSALVNHTIVDPGIPHNACGGLSIEVWQRFMQDCTAYEEQELLRLVYFGGVDPSLRKEVWPFLLGHYQFGMSEVERKEVDEQVRACYEQTMSEWLGCEAIVRQREKEQHAAALAKCSSGASIDSTIQRMMHRDSTVSNESSQSCSSDRQSHARLQSDSSSSTQVFESVEEVDQIEMEPKGDETKQVPKIPNGALPNGTTSPDSGHPSSRNFSITSGLSDRSLSTEDSAAPEAAIKAAAATAAPQQPPAQSGPVKTEQATGVSPSSSPTHSTRSQFQSNGKELQAKDKLEKVSKSPEVKESKAVDPEDCKVPQMEKVKLPGTVELKDVETKEVKSPELEARAQETEENKAAETEVVKSPETEDVIAPKTEITSPKTEVVKSQNRGEAVKSPETEEVKSLETEEVKSSETEIASPEAEVVKSPETEEVNTLEKEEAMDVEMKAKSPEMEEAMVPQTEVTKSPETEVVTEVGPETELVNSPEKEGVEVKQVKSPELKEGKVTEAEVDGAPETEEVKTLEVNDVETKGVKSPDKENAKGSEMDRDKTPETEKDKTPEMEEVRTPDVEACEPDEGRRTSVASSTVDTSEALLTTESDESPSAIEMEEIIMAKTSVISWDRKGPSMCTGGSLALAAPPPLGEAAMVVGLPMLELRLEEDGDKPSPEGTESVLSEEPEMESLFPQFDSLVVAGEMKNEAASPVSSIGTTYSQELLDMYTINLHRIEKDVQRCDRNYWYFTPANLEKLRNIMCSYIWQHLEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELVYDDVFAVWETIWAAKYTSSGHFVLFIALALVELYRDIILENNMDFTDIIKFFNEMAEHHNIKQVLTLARDLVCKVQTLIENKGVITEPWGYAGESVTAQDLKQEYDQCFNRWFAEKFLKGDRSGDPCTEMFKKYQVCVQPTQVPLDLVDKLERLALVDFRNQDAVVCLEKAIRFADQLHTINTEGVEPMDSVLEDRALYLRDDHVEEGGCAEVLLQLSKNTVEEYFVAPPGNIPLPEREGRAAVLKDSRVLSGEADGGEAGCGAVPGCDEEGGYGATTSGEGVVTDSEGVEIHGLAGNVSAVDGVLTWCDRNSVLSRRRRAYSISSLRRNSTTPSPSCQLPVGGRPVGREGRIQPPKGRFHTVPTRCASLRWGQERRGHFVSLKMLSLSDFQKSPP

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF02686	GatC	Glu-tRNAGln amidotransferase C subunit	Family	Interproscan
PF02759	RUN	RUN domain	Family	Interproscan
PF05254	UPF0203	Uncharacterised protein family (UPF0203)	Family	Interproscan
PF12068	PH_RBD	Rab-binding domain (RBD)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000195	Domain	Rab-GAP-TBC domain	Interproscan
IPR003837	Family	Glu-tRNAGln amidotransferase C subunit	Interproscan
IPR004012	Domain	RUN domain	Interproscan
IPR007918	Family	Mitochondrial distribution/morphology family 35/apoptosis	Interproscan
IPR021935	Domain	Small G protein signalling modulator 1/2, Rab-binding domain	Interproscan
IPR035969	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR036113	Homologous_superfamily	Glu-tRNAGln amidotransferase superfamily, subunit C	Interproscan
IPR037213	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR037745	Domain	Small G protein signalling modulator 1/2, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006450	Biological Process	regulation of translational fidelity	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-