Gene detail

Detailed information of KAJ8378134.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8378134.1	HELICASE SRCAP-RELATED	AAFF_1.1_unplaced_330	251394	264349	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00247720

ATGGCCGCCGAGCCGGGCGGGGTGGAAGATGGCGTCCGCACCAAGCTGGCCAGACCCCTGCACCTGCAGCACCTGGAGAGAGCGCTGCGCCTGGACTCCCTCCTGCGCCACACCTCCACGCTCTTCAACAGAGACCTGTCCAGCGACGAGAGTGACGATGGTTCGGGAGAGGGCCCGTCGCTCGCCCCCTCGGACCCCCAGTCGCCCCTGCAGAGGCCGAAGGACGAGCCCCTGGATCCGGGGGACTGTGGGGGGGAGAGCAGCGCTCTCAACGGAGCCCTCCTGCAAGAACTCAGACCAGACAAGGCCAGTCTCTACAACTTCTCCAAGCTGAAGAAGAGCAGGAAATGGCTCAAGGGGATCCTGCTGAGTGATGACACCACGGACTCGGACTCTGACTCAGACTCTGGTTCCGACTCGGACTCTGACTCGGACTTTGCGCTGTCCCGGGAGGAGCTTCACGACATGCTGCGACTGCACAAGTTCACCAAGCTGCACCAGAGCAGGTTCCACATGGACCGGGAGctgCAGCAGTACCAGCACTACAGCGTGGGCCTGCTCTCGTCCCACGACCCGTTCTACGAGCAGCAGCGCCGCCTGCTGGGCCCGCGCAAGAGGAAGATCAAAGCCAAACTAAAGAAagtgaagaagaagaggaaaaggGGGGATGACTTCTCCTCCGAGGGGGGGCGCCcgtacctcaccaagatcttcgcCAAGTTCTCCCACGATGCACCTCTTCCCCTGTCCAAGAAGAAGCACCTCACGGTGGAGCAGCTGAACGCCCGCAGGCGGAAGGTCTGGCTCACCATCGCCAAGAAGGAAAACCCCAAGGCTTTCAAACAGAAAGCTTCAGCTCGGAACTTCGTTTCAACCAATGCCAAAAAGCTGGCGCAGCAGTGCATGCGTGAGGTGCGTCGGGGGGCCCTGCAGGCCCAGAAGAGCTGCAGGGAGACGTTGCCGCGGGCGCGGCGCCTCACCAAGGAGATGCTGCTGTACTGGAAGAAGTACGACAAGGTGGAGAAGGAGCACCGCAAGCGCGCGGAGAAGGAGGCGCTGGAGCAACGCAAGCTGGACGAGGAGATGAGGGAGGCCAAGAGGCAGCAGAGGAAGCTGAACTTCCTGATCACGCAGACCGAGCTGTACGCCCACTTCATGGGCGGGAAGCACGCCGCCGGGGCTGATGGGATACAGGAGGACATCCTGCGGAAGCTGGAGGACAGCTCCTCGCACCGGCAGATCGACATCGGCGGCGGCGTCATGGTCAACGTCGGCCAGGAGGACTACGACAGCGATTACTACAAGTCCCAGGCCCTGAGGAACGCTGAAGAGGCCTACCAGATCCAGCAGGCCAGAACCAGGCTGTTTGACGATGAGGCCAAGGACAGGCGCTGCGCATCACTGCGTGTGGCCAGTGACTCCGCCCCCTTTGCCTGGAGGCCAAGGACTCCGCCTGCGCGCCTGGTGGCCAGTGACTCCGCCCCCCTGCGCCTGGTGGCCAGTGACTCCGCCCCCCTCCGCCTGGTGGCCAGTGACTCCGCCCCCCTGCGCCTGGTGGCTGACTCCGCCTCCTGCTTCGGCGAGAGCTACAGCCTCTCCAACCCCTCCATCAGCGCCGGAGAGGACATCCCCCAGCCCACCATCTTCGACGGCAAGCTCAAGGGATACCAGCTCAAGGGCATGAACTGGCTGGCCAACCTGTACGAGCAGggCATCAATGGCATCCTGGCGGACGAGATGGGCCTGGGGAAGACGGTCCAGAGCATCGCCCTGCTGGCTCACCTGGCCGAGCGGGACAACATCTGGGGCCCGTTCCTGATCATCTCCCCCGCCTCCACGCTCAACAACTGGCACCAGGAGTTCAGCCGCTTCGTGCCCAAGTTCAAGGTGTTGCCGTACTGGGGAAACCCGCACGACCGCAAGGTTATCCGCAAGTTCTGGAGCCAGAAAACCCTGTACACTCAGGACGCCCCCTTCCACGTGGTGATCACGAGCTACCAGCTGGTGGTGCAGGACGTGAAGTACTTCCAGCGGTGA

Transcript

AAFF_T00247720

GCCGCGCGCCCTATGGCCGCCGAGCCGGGCGGGGTGGAAGATGGCGTCCGCACCAAGCTGGCCAGACCCCTGCACCTGCAGCACCTGGAGAGAGCGCTGCGCCTGGACTCCCTCCTGCGCCACACCTCCACGCTCTTCAACAGAGACCTGTCCAGCGACGAGAGTGACGATGGTTCGGGAGAGGGCCCGTCGCTCGCCCCCTCGGACCCCCAGTCGCCCCTGCAGAGGCCGAAGGACGAGCCCCTGGATCCGGGGGACTGTGGGGGGGAGAGCAGCGCTCTCAACGGAGCCCTCCTGCAAGAACTCAGACCAGACAAGGCCAGTCTCTACAACTTCTCCAAGCTGAAGAAGAGCAGGAAATGGCTCAAGGGGATCCTGCTGAGTGATGACACCACGGACTCGGACTCTGACTCAGACTCTGGTTCCGACTCGGACTCTGACTCGGACTTTGCGCTGTCCCGGGAGGAGCTTCACGACATGCTGCGACTGCACAAGTTCACCAAGCTGCACCAGAGCAGGTTCCACATGGACCGGGAGctgCAGCAGTACCAGCACTACAGCGTGGGCCTGCTCTCGTCCCACGACCCGTTCTACGAGCAGCAGCGCCGCCTGCTGGGCCCGCGCAAGAGGAAGATCAAAGCCAAACTAAAGAAagtgaagaagaagaggaaaaggGGGGATGACTTCTCCTCCGAGGGGGGGCGCCcgtacctcaccaagatcttcgcCAAGTTCTCCCACGATGCACCTCTTCCCCTGTCCAAGAAGAAGCACCTCACGGTGGAGCAGCTGAACGCCCGCAGGCGGAAGGTCTGGCTCACCATCGCCAAGAAGGAAAACCCCAAGGCTTTCAAACAGAAAGCTTCAGCTCGGAACTTCGTTTCAACCAATGCCAAAAAGCTGGCGCAGCAGTGCATGCGTGAGGTGCGTCGGGGGGCCCTGCAGGCCCAGAAGAGCTGCAGGGAGACGTTGCCGCGGGCGCGGCGCCTCACCAAGGAGATGCTGCTGTACTGGAAGAAGTACGACAAGGTGGAGAAGGAGCACCGCAAGCGCGCGGAGAAGGAGGCGCTGGAGCAACGCAAGCTGGACGAGGAGATGAGGGAGGCCAAGAGGCAGCAGAGGAAGCTGAACTTCCTGATCACGCAGACCGAGCTGTACGCCCACTTCATGGGCGGGAAGCACGCCGCCGGGGCTGATGGGATACAGGAGGACATCCTGCGGAAGCTGGAGGACAGCTCCTCGCACCGGCAGATCGACATCGGCGGCGGCGTCATGGTCAACGTCGGCCAGGAGGACTACGACAGCGATTACTACAAGTCCCAGGCCCTGAGGAACGCTGAAGAGGCCTACCAGATCCAGCAGGCCAGAACCAGGCTGTTTGACGATGAGGCCAAGGACAGGCGCTGCGCATCACTGCGTGTGGCCAGTGACTCCGCCCCCTTTGCCTGGAGGCCAAGGACTCCGCCTGCGCGCCTGGTGGCCAGTGACTCCGCCCCCCTGCGCCTGGTGGCCAGTGACTCCGCCCCCCTCCGCCTGGTGGCCAGTGACTCCGCCCCCCTGCGCCTGGTGGCTGACTCCGCCTCCTGCTTCGGCGAGAGCTACAGCCTCTCCAACCCCTCCATCAGCGCCGGAGAGGACATCCCCCAGCCCACCATCTTCGACGGCAAGCTCAAGGGATACCAGCTCAAGGGCATGAACTGGCTGGCCAACCTGTACGAGCAGggCATCAATGGCATCCTGGCGGACGAGATGGGCCTGGGGAAGACGGTCCAGAGCATCGCCCTGCTGGCTCACCTGGCCGAGCGGGACAACATCTGGGGCCCGTTCCTGATCATCTCCCCCGCCTCCACGCTCAACAACTGGCACCAGGAGTTCAGCCGCTTCGTGCCCAAGTTCAAGGTGTTGCCGTACTGGGGAAACCCGCACGACCGCAAGGTTATCCGCAAGTTCTGGAGCCAGAAAACCCTGTACACTCAGGACGCCCCCTTCCACGTGGTGATCACGAGCTACCAGCTGGTGGTGCAGGACGTGAAGTACTTCCAGCGGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF13892	DBINO	DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR020838	Domain	DBINO domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR050520	Family	INO80/SWR1 chromatin remodeling helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45685	HELICASE SRCAP-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0031011	Cellular Component	Ino80 complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0043044	Biological Process	chromatin remodeling	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-