Gene detail

Detailed information of KAJ8378075.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8378075.1	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	AAFF_1.1_unplaced_332	650493	660088	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00248700

agagtgtgagtgtggaggagagggagaggaagagcatAGCAAGGGTCCATGTGAACATACAGAGCATGGTATTCCAGCTTGGGGCCTGGCCCAGACTGCATGAACCAGCCTCACACTACATCCCTTGTCTGGCCTTCTCAGCACCCCCtcacccaccacccccaccccaggcAAATGAAATCATGCTGAGAAGACATCGTTCCTGTGCATCACGGGGTCTTCAAGCACTTTGCAAACTCtcgctcccccacccccccctccccaatttCCCTCAACACGCCTGCATGGTGACCGTGACAACCATGAGGGAGCTCCCAGCTGCTGGGcccaggacagacagacagacagacagacggcccTGTGCTGTACAGGGACAGTGCAAAAAGCGAGGAATTATCTTTGAAACTTCTTGGGCTCGCAATCGGACTGAAGGCCCATTGCACGCCATTAGACATCACCTCCGCGACTCGTGTGGTTTCTCGACGGATTGATCTTTGCACACGTCGACGGAGAGACCGCGCTGATAGCAGAGCGCGTGCAGTCGAGGCGTTTGTCGCGCGACGCGCTAACGTACGCCTCGAGTGTTCATTCCAGATTGTAAGAAGTGCTGTGTTTTTAAGTTTGTTACCTGTACTCTCTGAATTGTATATCGTTACACTCCGTTTCTTTCTCTGTATGATTATGTTAGAACCAGGCTCTGCTGAATAGGAAGATGGGGATTGGCTAACGGTCCCTTCTGCTGAAATCCGAAGGCACTCGTCTCAGAATACTTGAGTAATCCAAAGCACTTGCTGAATGACAGTCATGACAAGCTGTGTACCATCatcaaataagaaaaataaataaatgaatgcaaacAACCATCAATCCGTAGTTCTTTCTATGCCGAGTGAATACGCCTTGACTTCCGCCCCGCAATCAGAGCCGACCTTACGTGACCGATCATTTCCTGCCCCTCACAAGCATGGCGTCCTACTGTCGTTTCGGACGATTGTTAAAATTGTCTGCTTTAAAGTCAGCACAGCTGGCTCGCGCGTCTGTGCGGCGGTACCAGGGCACGGGGCTGTATTGGACTCCACACGTCACGCGGAGCGTCAACAAGAGATGGCCTCAGTCACCCATCCTGCACGTCACAGCTAGGACGATGTTCATTCAGACCCAGGACACTCCGAACCCAAACAGCCTGAAGTTCTTGCCCGGCCGCTTGGTGCTGGAGGTCGGGACGATGGACTTCGCTGCCCCTCGAGATGCGTACTGCTCTCCACTGGCCAGGCAGCTCTTCAGAATCGATGGTGTCAAGAGTGTCTTTCTGGGCCCAGACTTTATCACCATCACCAAGGCGGATGTGAATCTGGAGTGGAAGGTGATCAAGCCAGACGTCTTCGCCGCCATCATGGACTTCTTCACCTCAGGACTGCCCGTGGTCAACGAGGACGCCCCTCACGCAGACACAGCCCCCTCAGAAGACGACGATGAGGTGGTGTCCATGATCAAAGAGCTCCTGGACACCCGCATCAGGCCCACGGTGCAGGAGGACGGGGGAGATGTGATATACCGGGGCTTTGTGGACGGCGTGGTCAAGCTGCAGCTGCAGGGCTCCTGCACCAGCTGCCCCAGCTCCATCGTCACGCTGAAGAGCGGGATTCAGAACATGCTGCAGTTCTACGTGCCCGAGGTGGAGAGCGTCGAGCAGGTGAAGGATGGAGAAGAGGGCGATGAGGAGAGGGGGGTGCAGGCCTGAGATCGGCAGCGTCCTGACCAGAGAGcacgtcccgtcccgtcccaaAGCTGTACAGACCCAGACATTCCGCCCGCCCCTGCCCTCTCCGTCATTTCCCCTATTATCACATTTACAGCATGAGTTTGTGCGTGCGTTAGAAACAGAGAAGGGTGGCAGAGTGGACCTGGTCAATATCAAGGGCTAGTGTTTCCCTGGAAACCTCACGTGAGGTTAAACCCCAGCACTCTGTGGTGGTCCACAAATGGAGTCCGAGCTCAGCCTGCCCTGGGATTGGTGGATAGGAGATTCTGTTCACACCAAGCATTTCTGCTTCCTGTTTTGCAAACGCCAGCAATAGcagatggggggagggaaagattTTTGCTTGTTTGGAATGGATTTGTTGAAAgataaaaaacgaaacataatTTATTCCTCTCAACGCAACGAGCAGGTCTTCGGCAGTAGCCAGACCGTGAGCCCACCTGCCATGCACCTGTGTGTACAGTGTAGTGTAAATAGTGTGAAAGTAAAGGATCTTTTGTTTAAGCGCATCTCCTGTTGAACACAAACGTGCTCTAACCCTGTCACGGGGCTCACGTGTGTCAGGTGCGCTGGATTACCAGTGTGTGGCCACCGGACATGCCTTTCAGACGGCGGACGGATCCCAGGGGATGCAAACgcactgaaaacaaaataaacaatgtctCCCCATGTCCCGATGCTTTCAGGCTGTTCCTGTTTGTGTCTCTCCCTGTAGAATCTCGTTATTTTCCTGCTCAGGTTACATCCATAATCATCACTGATGGAGCGCTTCAGTGAATCTTTTGTTTAAAGATTAACACGCTTGTTGAgtttatgtacatttcagaagtGTGTGCTATTAAAGGGGCGCTCTGGtcaaaatgtttcttttgtAAGCAGCATGGTCATGTATGAAACATTGCCTTTATGACTGAGAATGATGTTATTGACAAAGCTAACCTAGAGCCAAACCCTCTCTCCAGATTGCCGATGGTAAACGCGATGAGAAGTTAAAAAGTTTTGCGTGTGTGGGTCATTGATCGAGTTAAGACAACCGAAAAGTTGTACACATGCTCATacatattttatccaaagcgacttacagtaagtagtgaatgcataccttTTTTTAGTATGTGTCCCagtgaacctgcaacctaaccactgccaacgccgtgctctacctactgagccacacagaatagTGAATATTTccctaatatttatttttgcggGTCGGTTCTGGCTCTCTCACTGATTTCTTGCAGCAGTATAGTTGCAGTTGCACCATCGGTTGTTAGTAGGGGAGGGTTCGTCTCTGGGCACTCtgttcatgaagcctcattcTCTCATCAAGGTTATGTTGCGTACATGATTATACAACATAacaaatgttatattttgaCTGGAGTGCATCTTTAATAATTGTAATGACGAATGCCCATTACTGTGTGTGTAGTACCTTCAACATACCATATCTCCATGGTCACATTATCTGCAGATCATTTAAGTACTTGTAAAATGCCTATTGTATAGATGTTCTGGTTTGAAGTGCAACtgtatgaatatgtttatttaaaatggttttACTGCTGTAATAgttatgtaataataaaaaaataaacatt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01106	NifU	NifU-like domain	Family	Interproscan
PF08712	Nfu_N	Scaffold protein Nfu/NifU N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001075	Domain	NIF system FeS cluster assembly, NifU, C-terminal	Interproscan
IPR014824	Domain	Scaffold protein Nfu/NifU, N-terminal	Interproscan
IPR034904	Homologous_superfamily	Fe-S cluster assembly domain superfamily	Interproscan
IPR035433	Family	NFU1-like	Interproscan
IPR036498	Homologous_superfamily	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0097428	Biological Process	protein maturation by iron-sulfur cluster transfer	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-