Gene detail

Detailed information of KAJ8377985.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8377985.1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	AAFF_1.1_unplaced_335	625818	639197	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00249750

AACGCATAGCAATGGGTGCAGTCGAACCcgccaaataaaaatgaaacaacgTTCACATTTTCTGGCCATGATGCGCATGTATTTTGAGCCTGTTTGTGGCCTCAACGCACAGCCTCAACGCCGCTTAGGTCACCACCGTACCAAAGTATATGCTGTTGCGATGGTTGCCGGGAAATAGGCGGAGTACCCAGTGACTGCAGCAGAAAGAACTCGTGTGACGAATAACTGCACAGGCTAGCTGGTTATCTAAATAGTCAAAGCGgggtttctctttttttttttacattttattttacaggctTTGGAAAACTAAAATAGTAGAACGCTAAGATGGCAGGAAGTGCAGGAGAGTGGTGTCTCATGGAAAGTGACCCGGGGGTTTTCACAGAATTGATAAAGGGTTTTGGTTACAAAGGAGCACAGGTTGAGGAGATCTGGAGTATGGAACCTGAAAACTTTGACAAGCTTAAGCCGGTTCATGGATTGATTTTCCTTTTCAAGTGGCAGCCAGGAGAAGAGCCTGCAGGTTCAATTGTTCAAGATTCAAGGCTTGACCACATCTTCTTTGCCAAGCAGGTCATTAACAATGCATGTGCTACACAAGCCATCGTCAGTGTTTTACTGAATTGCTCACATTCTGACATGCTTCTTGGAGAGACATTGACCGAGTTCAGGGAATTCTCACAAAGTTTTGACGCTGCCATGAAAGGTCTGGCCTTGAGCAATTCCGAAGTGATTCGTCAAGTCCATAACAGCTTTGCCAGACAGCAGATGTTTGAATTTGACGCAAAGTCATCTGCAAAGGATGAAGATGCATTTCACTTTGTGAGCTACGTTCCAGTTAACGGCAGGCTCTATGAGCTGGATGGACTTCGTGAAGGACCAATTGACCTTGGTGTCTGTAACCAAGATGACTGGATAAATGCAGTTCGGCCTGTTATCGAGAAAAGGATACAGAAATACAGTGAAGGAGAAATCCGTTTCAACTTAATGGCAATCGTGTCAGACAGGAAGATGATTTATGAGCGCAAAATTGCAGAATTACAGGCTCAGCTCACAGAAGAAGAGCCGATGGACACAGACCAGAGCAGCAACCTGCTCAGTTCGATTCAGTCAGAAATTGCAAAATACCAACTCCTAATTGATGAAGAGAATCAAAAACTCAAGCGATATAAGATTGAAAACATCAGGAGAAAGCACAACTACCTGCCCTTCATCATGGAACTGTTAAAGACACTGGCTGAGTATCAACAGTTGATTCCATTAGTGGAAAAGGCAAAAGAAAAGCAAGGTGCCAAAAAAGTCCAAGAAGCCAAGTGACCACGTACTGTTCTGTCATTTTCATGTGAATAGCCACGGATAAACCTCACCAGTCTTCTGTAACCCTTGTGATGAGCACAGGGAATTCAACTGAGGACTGTCCTGCATTTGTTAATGAGTTGTAACATGCATgtacggcttgcagctgccaacgattatgtctatatACTGCATCACGATAATGATCTCTGGCGCGGTCTAGGATTAATcttacaatgtattaatgcacattttgggggcctcccgcgtggtccagtggttacaatgttcgatgctggccacggtgaccggggttcgattccccattgtgccagagtcggctgtggccgggagtgccaccgggggcagcaattagctgccagccccagggaggggggaaggaagccgacaggatgtttgctgaatacaggagtggctctggggtgccggagttatggctgacggcttggcaagtgccgtctcgaaagagacgatgcttcgcctttgacaCCAcgggtcacagggctatgggaGACACACCGCAAAGACATCAGACCCGAAGACGTCGCGACCAGATTCCCATGTCCCGAACCCGAAACGCATGGAACCCCTCTGACCGCGGAGCAAAaAGCCCACGTGGTTAAAGCGTGCACGCACATGCGTGCGACCCACGCATAcgctagagaacacaca

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|UCH\|UCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01088	Peptidase_C12	Ubiquitin carboxyl-terminal hydrolase, family 1	Domain	Interproscan
PF18031	UCH_C	Ubiquitin carboxyl-terminal hydrolases	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001578	Domain	Peptidase C12, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR017390	Family	Ubiquitinyl hydrolase, UCH37 type	Interproscan
IPR033837	Domain	Ubiquitinyl hydrolase-L5	Interproscan
IPR036959	Homologous_superfamily	Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR041507	Domain	Peptidase C12, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10589	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0031011	Cellular Component	Ino80 complex	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-