Gene detail

Detailed information of KAJ8371850.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8371850.1	GTPASE, IMAP FAMILY MEMBER-RELATED	AAFF_1.1_unplaced_427	260200	288809	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00299450

TTTTATTGCAAGGCATGTTCATGTTTTACACCCGCAGAGACAAAACAGACAGGAGACAGAATCCAGTATGTACTGTCTGAAGtaaggaaggaagaaaacaagaaaataggACCAATGGCAACATCTGCTTCAATACTGAAAGATAATGAGCCCCACTGTGCAGACCTGAGGATTGTCCTGCTGGGAGGAAGATGgggtgggaagagttcagcggGTAACACCATCCTGGGAGAAGAGAGGTTTGAATCTGGGAGACAGAGAACAGCAAAGAGTGATAGCAGACATGCAACAGTGGCCGGCTGGCAGCTCGTGGTTGTTGATACACCAGGGTGGAAGGGTTATTTCTCTTTGAGGGAAACCACACAGGCGGATAAAGAGGAGATCAAGCGcagcgtgtgtgagtgcttcCCAGGACCCCATGTTTTCCTCCTGGTTGTTCCCGTGGATACAGCATTCACCACAGAACACAAGAGAGCGCTGGTGGAGCACCTGAAGCTTCTGGGTGAGAGGGTTTGGAAACACTCCATGGTGCTGTTCACCTGTGGAGACTGGTTGCATGACAAAagcattgagcagcacattgagacagAAGGCAAAGCCCTCCAGTGGCTGGTGGACAAATGCAGGAACAGATACCATGTACTTACAAATAAGAGCAGAGAAGAACATCCCACTCAGGTCACCGAGCtactggagaagatagaggagatggtggcaggaaACAGTGGTGGTCATTATGAAGCTTATGAAAGTGAATGTCAGATATGGCGGAATAAGACGTTGAAGGTGAAAGAAATGGCAgagaagaggatgatggagatGGAGAAACAAAGAGAGGAGCGCAGGGCACTCCTCCAAGGAATGGAAACGCAGCCCACAGAACTAAGTGTGGTTCTGCTCGGGAGCCGAGGTGCTGGAAAGAGTGCATCAGGAAATACTATCTTAGGCAGCGAGGAGTTTGACATTAAGAAAGGGACCTCAAAGTCTGTGGTGAAATACGGGAATGTGGAAGGGACAACGATGGTCACCTTagtcgacacaccaggctggtggagGGACTACTCTGTCTCCAACACTACACAGCTggtcaaacaggaagtgaaactcagtgtgtctctgtgtcgtCCTGGACCCCACATTTTCCTGCTAGCCATTGACACAGATGTAGCATTCACAGAGGAGCAGAGGGCCGCCGTGGAGGAACACCTGCAGCTCATCAGTGGGCGGATCTGGAGCCACACCATGATTCTGTTCACCAGAGTTGATTGGCTAGGAGCCAAATCCATCGAGCAGCACATAGAGGAGGAAGGAAAAGCTCTCCAGTGGCTGGtggagaaatgtgggaacaggtaccACGCTCTCGATAACAAGAACAAGGAGGGTTGCGCTCAGGTCTCAGAGCTACTACAGAAGATGAAGGAGATGGTGGCAGAAAACAGGGGATGCTACCATGAGGTGGATGAAATGGCTTTACGGGGCATGGAGAAGAGAATGAAAGAAGTGGAGGAGAAAGCTAAGCAGAGAATGACAACAGCAaaggaagagagtgagagattcCAAGGGTCAAGTAATCATCTCCCAGAGGTGAGGGTGGTTCTGCTGGGGCAGACATCATCTGGGAAGAATGCCTCAGGAaccaccatcctgggcagagaggtgTTTCCCACCTGTGAAACTGTGCAGTGTGAAATAAAGAAGGGTGAGGTAGCAGGGAGACAGGTCATCATTGTGAATTCACCAGGCTGGAGGGATAATGCAGTATGGTGCACTATGGAGCAGGATATGGAGATTGCGAGgagcctgtctctctgtcccccagGACCCCACGTTGTCCTCCTGGTCATCCCTGTCCATGTGGcctacacagagagacacaagaGAGCACTGCAGTATCACCTGTCCTGTTTTGATGAGGAcatctggagacacactatggTGCTATTCACCTATGGGGACAAACTGGGAGACACAGCCATCGAGCAGCATATCGAGATGGAGGGCAGGCCCCTCCAGTGGCTAGTAGAGAAATGCGGGAACAGGTACCATGTTTTCAGAAATAAGAACGGGGGCGATGTCGGTCaagtcacagagctgctggagaagattgAGGAGATGGTGGCGGGAAACTCTGAGAAGCAGTTCTTTCCTGACGGGCTTCAGGTCTACCAGGAagtggaggagatgaagaggagggAGGCAGATGAAATGAAGGCATGctttgaggaggaatggaggaagagagagaaagagctttTGGAGAAGTTCCGAAAGCTTTTGTTGGAACTGCAGAAAGAAACAGGGAAAGCCAGTCTTCCACCTAAGCTAAAGTGCAAGCTAAACTTTGCCCCAAACTCAAAGGAAAGCAAATTTGAGAAAGGGTGGATGAGCAGGGAtgagcagatgaagaggagtctgaGAGAGAAGATGGCAGAGCTGGACAAAGACATCGAGCAAGTCAAACTGCCAGTCCATCTGAGGAGCAGCTATGACCTTATCCCACCACACTTGAGTGGGAGCACAGCCTctacaaacagcagctcagaagaCCTCTGGAGTGAGGATTACAAAAGAACGTATAACACCGTGATTCCTTTGCTGTCTGACCAGAGGAGAAAGGTGGCTGGGTCGCCCTCCATTTTTTCAGCCGCCTTGACTGATGAAGATTCCGGAGTCTATTCTAGTTCTTCGGTttggaacattttttttaaagccccaACGATGcatGGACGAGTGAAGCTGAAGTCAACAGCTCAGcaagaagaggagaaaagaaaagagagagagaagaaactcAAAGTGTATGTGGCGGCTCGAGATGCCTGCTTTAACAAGagGAAGGAGGGCATTATGGACGATGAAGCCCTGCAGTTGACCCAGCAGCTTCTCTCCTCAAACCCAGACTTTGCAACCCTGTGgaactacaggagagagatCCTGCTGCACCAGGAGACCATAAGggtggaggaggaggtacAGCGGCTCTATGAGGATGAGCTGTCGATCCTGGAGGGGTGTCTGAAAGTGAACCCCAAGTCATACGGCAGCTGGCACCACCGCGGCTGGGTGTCTTCCCGCATCCCCCGGCCCGACTGGGTCAGAGAGCTGGGTCTGTGTGACCGCTGCCTGGCCCTGGACGACCGCAACTTTCACTGTTGGGATTATCGGCGGATGGTGGTGAAGCTGTCCGGCCcgctcctccacccccccccccagacacactcacaccgcgtctgtgaggagcagctgctcaaagagTATGAGCTGGTGCAGAATGCCTTCTTCACCGACCCCAACGATCAGAGCGCCTGGTTCTACTACCGATGGCTGCTTGGCAGAGCGGAACGAGAGGAGATGAttagctgtgtgtatgtgagcagagagggggagagggtggttGTGGCTTTCTCCAGACCTGTGAACgccctGTCCATAGGGCTGCTGTTAGTGGTGGACGGACAGCCCCTGAAGGTGGACTGGAAAAGCGTTCACCCCCGTTTCCGCCACTGCCCTGTCTGGATCTGTGAGCTGGCACCTGGGACGGTCAGTGACACGAACAATGAACACAACCTGACCGTGCACTGGACTGAGAAACGCACGCACAGGGACTGCGCGCTctacacagGTCGATCAGAAAGCTGGTGCAGAGACACTGCCACTGACCAGGAGCTTTTCAGGAGCGAGCTCTCTGTAGAGAAGACTTCAGTGTTGCAGTCAGAGCTGCAGTCCTGCACACAACTACTTGAGCTGGAGCCTCAGAACAAGTggTGTGTACTGACCATAGTTCTCCTGATGAGGGCGCTGGATCCCCTGGGGTATGAGAGGGAGACCCTGAAACACTTTGAGACTCTGAAGGTTGTGGACCCCATGCGCTGCTCATACTACAGTGATCTGTGCAGTAAGTTTATGATGGAGAACACCATTCTGAAGATGGAGTACGCTGAGGTCCGAGTCTTCAGCCTGTCTGGAaagAAACTGACAACCCTGAGCCACCTGGATCAGCTGCTATTGGTCACTCACATCAACATCTCCTCCAATCAGTTGCAGGCCCTGCCTCCTCAGTTTGCCATGCTGCAATGCCTTGAGGTGCTGGAGGTTGATGACAACATTATTGAGAATCTTTACGGACTGTACCATCTGCCCCGACTGGAGGAGTTGTCGCTGAGGAACAACAAAATCTCTCGGCTCTCTGACCTGAAGCCCCTGACCTCCTGCCCCAAACTGACCCGGCTTGATCTCCGTGGAAACCCAGTCGCCCAGACAGCCAACATCCAATCAGAGCTGGCCGAGCTGTTGCCCTCGCATGGAGAGTGGGCGCGGTACCACCTCCGGGCAGCAGAGGGAGCCAATACCAGCGTTAAGTTATTCAACATACCTCCCACTGGAGAAAGTTGA

Transcript

AAFF_T00299450

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01239	PPTA	Protein prenyltransferase alpha subunit repeat	Repeat	Interproscan
PF04548	AIG1	AIG1 family	Domain	Interproscan
PF07711	RabGGT_insert	Rab geranylgeranyl transferase alpha-subunit, insert domain	Domain	Interproscan
PF14580	LRR_9	Leucine-rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002088	Repeat	Protein prenyltransferase, alpha subunit	Interproscan
IPR006703	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR009087	Domain	Rab geranylgeranyltransferase, alpha subunit, insert-domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036254	Homologous_superfamily	Rab geranylgeranyltransferase, alpha subunit, insert-domain superfamily	Interproscan
IPR045058	Family	GTPase GIMA/IAN/Toc	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004663	Molecular Function	Rab geranylgeranyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008318	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342	Biological Process	protein prenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-