Gene detail

Detailed information of KAJ8353063.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8353063.1	NACHT, LRR AND CARD DOMAINS-CONTAINING	AAFF_1.1_unplaced_1763	813	16103	-

Gene Structure

More details in Jbrowse Sequence

CDS

AAFF_T00112700

ATGGCTGCGATGGGGGACCCTGAAGAAAAAGCTTCAACCCACAGCTACATGGTAGATGgaaaacattttgtgGACGAGAACCAAGTTAAACTGATAGAAAGGGTTAAACTGGTGAAACCCATCCTAGATCACCTTCTTCAAAAGAAAATGTTGGGATCTGAGATGTACGAAAACATTGCAGTGAAGAAAACATCTTATGAGCAGATGAGATGTCTGCTACACAATGTCATCTTTCCAGGAAGCAACGAGGTCAAAGATGAGTTCTGCAGGATtttagaagagaaagagagcaatcTAATGCGTGAGCTGAGAGGTTTGAAATACAATCAAGTCTCCCTCCAGGAGTCCGCTGAATCTGGAGAGACACCTGGAGCCAGAAAGCCTTATCAAGTCAAGAACAAAGTTAAACAAAATGTGAAGGGAAAAGTTGAGTGGACATTACAAGGACATGCAAAACTAGAAAAAGAAGGAAACAAAACATCCCTCAACAGTTTCTTCACAGAGATCTACATCATCAAGGGGGGCAATGCGGGGCTGAATTTTATCAAGGATGATCAATACAGTCTGAGAGGACTTATTGATTACTTTCACCCAGAGATGGAAGGGTTTGATTTTGAGAACTACAAAGTTCTGTTCATCTTTGATGGTCTGGATGAAAGTCGTCTGCCTCTAGAGTTCAATAGCAAAAAGTTGTGTGTAGGAACAGAGCCAACATCAGTGAGCACGCTGCTGGTGAACCTCATTAAGGGCAATCTGcttccctctgctctcatctggATCACTTCCCGGCCAGCAGCATCCAGTCAGATCCATCCTGATTGGATCGACCAGGTGACAGAGGTACGAGGGTTCAAGGACCCACAGAAGGAGGAGTACTTCAGGAAGAGAATCGGAGATCAGAACCTGGCAGGAAGAATTATCTCGCATGTGAAGTCATCCAGGAGTCTCTACATCATGTGCCACATACCAATCTTCTGCTGGATTGCTGCCTCTGTTCTGGAGACAATGTTGGGTAAAGCAGACAGTGAAGACCTCCCCACCAGTCTaactcacatgtacacatgcttCATATTGACTCTGACAACATTCTTCAGCCAGAAGTATGCTATCAACAGGGGACGAAAAGAGGCACAGGCACTGTCAGAGGCAGACAGGGAATTCATTCTGAAACTGGGGGAGCTGGCTTTTCAACAACTGGAGACTGGTAATCTCATATTCTATGAAGATGATTTGAAAAGGCTTGACATTGATGTCAGTGCAGCTTCAGTGCAGTCTGGGGTGTGCACAGAAATCTTCAAAGTGGATGTCGCTTCAAAGTTACGCGAAGGCAAAGTGTTCAGCTTCATACACCTGAGTGTTCAGGAGTACATGGCTGCTCTGTATGTGTTTTACTCATTCAGCACCAACAACACAAACCTGCTGGACCAACGCCCAGTTGGTTGGTTTACCAGGCTGTTTAAACCAACTTTGTTTGACTTGCACAAGGAAGCAGTGGATCAGGCCTTACAGAGTCAGACTGGACACCTGGATCTTTTCCTCCGGTTCCTTCTTGGTCTCTCACTGGACTCCAATCAGTCTTGGTTAAAAGGCTTACTTTCACAGACAAGAAGCAGACCACAGAGCACTGTGAAAACAGTCCAGTACATTAAGAAGAAGATCGGCAAGGGTCAATCTTCAGAGAAAAGCATCAATCTGTTCCACTGTCTGAATGAACTGAATGACACTTCCCTTGTGAAGGAAATTCAGAATTATCTGAGCTCAGGAAGAATTGGAGATGAAGAACTTAACCCTGCACAGTTGTCAGCACTGGTCTTTGTGTTGCTGGTGTCAGAAGAGGATCTGGATGAGTTTGACTTGAGCAAGTACAGTAGATCTGATGATGGCCTTCTGAGATTGCTGCCAGTGTTGAAAGTCTCCAAAATAGCTAAGTTGTGGGGTTGTAAACTCACAGAGGGATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGGGTCTCAATCCCCTGCATgattcaggagtgaagctgctctctgcagcactggagagtccacactgtaaactggagaaactgggGTTGGAGGAGTGTGAACTCACAGAGGGATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGAGTCGCAATCCCCTGCAGgattcaggagtgaagctgctctctgcagcactggagagtccacactgtaaactggagaaactg

Transcript

AAFF_T00112700

AAAAGCAGTACAATTTCTCTATTGATTAAAATGTCAGTTAACACTGTTGTATGCAAACACATTGTCACCATTTAGGTACAGCTTAGAACGCTTAAACAAACAACTCAATAAAACCAAGTTACCATTTCTTGTTTTactcaggtttttttttacaactgtgTACAGGCACCATGCAATCACATCAATTTCAATTATATTGTCTTTGATATGAATTTACCTTGTGACCATTACAAAATGACAGGTATACTTACAAAGTGGAGCTGATAACCTAAACAAAACCTAAAGGGTCCATGTACATCAAGGAAAACCCAAACTGGAATGACAATGTGATGAGAAAGTAAACCAATTGTTCTGGGTTGGCCAATAATTTAGAGTCATTGAGAGTAAGTCCAGACTTGACTGAAGGCAGGGGGGTGCTCAACATGGGCAATTTCCCCACGGCCACCAGGTGGCACTCCTCTGAACTCTCCAATTCAGCCATTGTCCTGTCCAGATCAGTCTGGGCAACCTTCAGCTCTTGAACCTCctggagcaggggtgggcaatcttaccctgtgtgggccggtgtgggtgcaggcttttgttccagccgagcagtatctcacctgatttgactaatcagctaatcaaagttttcaatcagggctttgattagtggaatcaggtgtgtcactgttcagttggaacaaaagcctgcaccaacACTGGCCCACACAGGTCCCCtgtcctggagggtgactcaccATCTGTCTTCAACGATGGCCGcccgcctctggttcttcaccaggtcttccttCTGGTCACGACAACTTCTCTCTATTTTTGACTCTGGTTCACACCGTCTCAGGTGCCAGCTCAGGCACAGGTTCTTCCACTACACCTTCTGTGGTTGTAATCTCTTCTGTGGTTGCAGGGACCTTGGCACTCACCGTCTCCTGGACAACCTTCTGGACCGCCTCGGTTAACACGGCTACCACTGCAACATCATCCTCCACCTTTTCTGCTGCCGGGACCTCAACTGCAGTTGGTGCCTCTTCTACTGCGGCTGGTGCATACACCCAcgcgtaatcatactgattgatttGGCATCCCTGAGGGAATAGAAGAGCATGGCTGCGATGGGGGACCCTGAAGAAAAAGCTTCAACCCACAGCTACATGGTAGATGgaaaacattttgtgGACGAGAACCAAGTTAAACTGATAGAAAGGGTTAAACTGGTGAAACCCATCCTAGATCACCTTCTTCAAAAGAAAATGTTGGGATCTGAGATGTACGAAAACATTGCAGTGAAGAAAACATCTTATGAGCAGATGAGATGTCTGCTACACAATGTCATCTTTCCAGGAAGCAACGAGGTCAAAGATGAGTTCTGCAGGATtttagaagagaaagagagcaatcTAATGCGTGAGCTGAGAGGTTTGAAATACAATCAAGTCTCCCTCCAGGAGTCCGCTGAATCTGGAGAGACACCTGGAGCCAGAAAGCCTTATCAAGTCAAGAACAAAGTTAAACAAAATGTGAAGGGAAAAGTTGAGTGGACATTACAAGGACATGCAAAACTAGAAAAAGAAGGAAACAAAACATCCCTCAACAGTTTCTTCACAGAGATCTACATCATCAAGGGGGGCAATGCGGGGCTGAATTTTATCAAGGATGATCAATACAGTCTGAGAGGACTTATTGATTACTTTCACCCAGAGATGGAAGGGTTTGATTTTGAGAACTACAAAGTTCTGTTCATCTTTGATGGTCTGGATGAAAGTCGTCTGCCTCTAGAGTTCAATAGCAAAAAGTTGTGTGTAGGAACAGAGCCAACATCAGTGAGCACGCTGCTGGTGAACCTCATTAAGGGCAATCTGcttccctctgctctcatctggATCACTTCCCGGCCAGCAGCATCCAGTCAGATCCATCCTGATTGGATCGACCAGGTGACAGAGGTACGAGGGTTCAAGGACCCACAGAAGGAGGAGTACTTCAGGAAGAGAATCGGAGATCAGAACCTGGCAGGAAGAATTATCTCGCATGTGAAGTCATCCAGGAGTCTCTACATCATGTGCCACATACCAATCTTCTGCTGGATTGCTGCCTCTGTTCTGGAGACAATGTTGGGTAAAGCAGACAGTGAAGACCTCCCCACCAGTCTaactcacatgtacacatgcttCATATTGACTCTGACAACATTCTTCAGCCAGAAGTATGCTATCAACAGGGGACGAAAAGAGGCACAGGCACTGTCAGAGGCAGACAGGGAATTCATTCTGAAACTGGGGGAGCTGGCTTTTCAACAACTGGAGACTGGTAATCTCATATTCTATGAAGATGATTTGAAAAGGCTTGACATTGATGTCAGTGCAGCTTCAGTGCAGTCTGGGGTGTGCACAGAAATCTTCAAAGTGGATGTCGCTTCAAAGTTACGCGAAGGCAAAGTGTTCAGCTTCATACACCTGAGTGTTCAGGAGTACATGGCTGCTCTGTATGTGTTTTACTCATTCAGCACCAACAACACAAACCTGCTGGACCAACGCCCAGTTGGTTGGTTTACCAGGCTGTTTAAACCAACTTTGTTTGACTTGCACAAGGAAGCAGTGGATCAGGCCTTACAGAGTCAGACTGGACACCTGGATCTTTTCCTCCGGTTCCTTCTTGGTCTCTCACTGGACTCCAATCAGTCTTGGTTAAAAGGCTTACTTTCACAGACAAGAAGCAGACCACAGAGCACTGTGAAAACAGTCCAGTACATTAAGAAGAAGATCGGCAAGGGTCAATCTTCAGAGAAAAGCATCAATCTGTTCCACTGTCTGAATGAACTGAATGACACTTCCCTTGTGAAGGAAATTCAGAATTATCTGAGCTCAGGAAGAATTGGAGATGAAGAACTTAACCCTGCACAGTTGTCAGCACTGGTCTTTGTGTTGCTGGTGTCAGAAGAGGATCTGGATGAGTTTGACTTGAGCAAGTACAGTAGATCTGATGATGGCCTTCTGAGATTGCTGCCAGTGTTGAAAGTCTCCAAAATAGCTAAGTTGTGGGGTTGTAAACTCACAGAGGGATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGGGTCTCAATCCCCTGCATgattcaggagtgaagctgctctctgcagcactggagagtccacactgtaaactggagaaactgggGTTGGAGGAGTGTGAACTCACAGAGGGATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGAGTCGCAATCCCCTGCAGgattcaggagtgaagctgctctctgcagcactggagagtccacactgtaaactggagaaactg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF17776	NLRC4_HD2	NLRC4 helical domain HD2	Domain	Interproscan
PF17779	NOD2_WH	NOD2 winged helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR041075	Domain	NOD2, winged helix domain	Interproscan
IPR041267	Domain	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Interproscan
IPR051261	Family	NOD-like receptor (NLR)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-