Gene detail

Detailed information of KAJ8349195.1 in Aldrovandia affinis Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAJ8349195.1	NACHT, LRR AND CARD DOMAINS-CONTAINING	AAFF_1.1_unplaced_2425	159	5890	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

AAFF_T00182890

TGTGGACTCACAGAGGAATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGGGTCACAATCTCCTGCATgattcaggagtgaagctgctctctgctggactggagagtccacactgtaaactggagaaactggaGATGGTGAGTTGTGGACTCACAGAGGAATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctgaaCCTGAGTTACAATGACCTGCAGgattcaggagtgaagctgctctctgcaggACTGGAGagtccacactgtaaactggagaaactggaGATGAGGTATTGTGGACTCACAGAGGAATGCTGTGGTGCGttggcctcagctctcagctcaaactcctcacacctgagagagctggacctGAGGGACAATCCCCTGCGTgattcaggagtgaagctgctctctgcagcaCTGGAGAGTCCGcactgtaaactggagaaactgggCATCTTCACTGAACCCCTTTATCCTGGGTCTGGATCGGGTCAGGGAGCATCGAGCGTGGCTGTGATGGGGGACACCGGAGGAAGAGCGGTCACACAGACGGAGGGTCAGGGAGCATCGAGCGTGGCTGTGATGGGGGACACCAGAAGAAGAGCCTCGGACTCCAGTGTCACACAGACGGAGGGTTTTGAGAGGAGACGGTGTGACAGCTGTGAAACGCTGACGGATTCCACCCAGTGGGATCTGGTTAAACCCTCTACATTCAGAGAGAATGGAATCTGTTCTTACAGGTTCACCTGCCGCCCTGGGCATTACGAGTGCTCGGAGTCGGGTTTGCGCTGGGTGTGTGAGGCTGAGGTGACCCTGCAGTATCGCTACGGGTCCTGGGAGGACCACAAAAGCCTgcagcacagtttacattttacagaggGTGGCCCCCTACTGGACATCACGCTTACTGCAGGTCAACTGAAGGAGATTCATCTGCCTCATTTCATCTGCCTGGGTCCTAACCCCTGGCTCTGTGACAAGGTGAAGGTGTTCCATGTGAAAGAGAGTGGGGCGAGTTTGGAGGACGTGTGCGAGGTGACCCGTTTCCACGTCAGGATCCTGCGGCCGGCCTTCTCTCCCATGGGAGTTGTGATACAACATATCAGTGGATTGATCCAGAGAATCAGGAAGTACCACTTGAGAGTACATTCCTGCCTGCTGGTCTTCCACTGCCCCACAAAGGAACATCTCACTCTCAACATCTACCTCATCCCAAGCAATCAGGGTCTTGTAAAGGCAGTggaagaagaggagagagagatgggttcTGTACGGATCAACAAGCCGCCTGGAATAAACACCTCCCTCACGCTGCATGGTGCCTACAACCTGAGAGTTTCCTGTCCTGCCACCATCATCCCAGAGATTTTATTACTGCAAGGAAACCGGCCTTTAAACTTCTTTGAGGTTTTTGTGGAACAAGCCGAGAGTAGATTCTCCATAGAGCTGACAGATCAGAAAAATACCCTGTGGACAACATCCCTACGTAGAGGAGATTGTAGCAGGAGAGAAGATCTTCAGGCAGGCCAGCATTTTGTGGACAAGCATGAACTTGAACTGATCGAAAGGGGCAGAATGATGGAGTCCATTCTAGACCAGCTTTGTCATCAGACACTTATTAATGATGAAGAATACAAGATCATTATGGCTGAGAAAACGCCACAAAGCCAGATGAGGAGGCTTTTGTACGATGTAATTTACCCGGGCGGCAGGGAGCTCAAGGATGCGCTCTACAGGATTTTAGAAGAGAAGAATCCGGCCCTCATGCGGGACCTGAAAGGGAAATACTAAATCCACGTCTTTCAGGTTAAGGCAGCGTGCACTCCAAGAGTCCTCTCTGTTCCCTGttcttattctttattttttattttttatttttttctgaatgtcCTGTTTCCTTTATGGACATCAGTTGGCCAGATTCAGCCATGgctttaaacatgttttaagtaGCAGATCCCCTCAGGATGGAGGTTGAATGGTtaatgatggtgtgtgtatCATTTATGGGGTATCACCTCCAGCAGCAGTAACATCGCTGATCCAAGAGGGTAAGCAGTGTTCCTCAAGATCAGATGCTAACCCTTTTAATTCCTCTTCCATTTGTTCTCttcctctcactcactcattctctctctccctctttcccctgcctctctcactcactcacttgttctctctctttctttctctttctctctccctctctctcgctctctctccccctctcaccctctctctctctctttctccctccctctctcacttgttctctctctcagaaatATAATCTTATTCTTTAGAAATTTCAGGAGGAACCCGTTCGCGATTcctcaggataagagcgtctgctaaatgcttaaaatgtga

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF13553	FIIND	Function to find	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001315	Domain	CARD domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR025307	Domain	FIIND domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR033516	Domain	CARD8/ASC/NALP1, CARD domain	Interproscan
IPR051261	Family	NOD-like receptor (NLR)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-