Gene detail

Detailed information of KAG7282904.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7282904.1	SLIT AND NTRK-LIKE PROTEIN 4-RELATED	PIJE02000014.1	308045	310654	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7282904.1

ATGTTCCAAAGCTACGGGGAAATATGTGAAAGACTGTGTGCCTGTGAGGAGAAGGAGGAGGTATTGACCGTGGGATGTGAGACCAGAGGAATTGGACGTCTCTCTGAGATTAATCCAGTGTACTACCCTACATATCACCTCCTGCTCACTGGGAACCTCCTGAACAAACTCTCTGTGAACGATTTTGTGGAGTACACCGGCCTCACGATATTACACCTGGGCAACAATGACATATCAGAGGTGGAGTCGGGCGCCTTTAACGGACTCCAGGGACTAAGACGACTGCATCTCAACAACAACAAGATAAATGCGCTGAAAGCGGAGCTGTTCTTTGGTCTGGAGAACCTTGAATACTTGCAGATGGACTATAATTACATCAGGCACGTGGAGGCGAACGCCCTCGGCATGCTGACTCATCTCGAGGTCCTGATTCTAAACGACAACTTAATATCGTCGCTGCCGACAAACATTTTCCAGCTCGTTCCCCTGACTCACCTGGACCTGCGGGGCAATCAGCTGAAAACGCTGCCCTACTTGGGTCTCCTGGAGCACATGACCAGCGTGGTGGAGCTGCAGCTGGAGGAGAACCCCTGGAACTGCTCCTGCGAACTCATCACCCTCAAGACCTGGCTGGAGAGCATATCCTACACGGCGCTGGTGGGCGACGTCGTCTGCGAGTTCCCCTTCCGCCTGCACGGGCGCGACGTGGACGAGGTCTCCAAGCAGGAGCTGTGTCCCCGCAGGGCCATCGCCGAGTACGAGATGCCTCACTTGAGCACCGACGCGTACCATTACAGGACTCCCCCCGCGGCGGTGGTCCCCACATCTCCCTTCACGTCAGCTGGCATCGCACGTTCCTCGTCTAGGCCCACCAAAGGACCCCGGCAGTCGAGCAAATTAAAGAGCAAGCCCACAGCTCGCGTCCGGTCCAATAATAAACCGCAAAATTACGGTCAAATCGTTTCATATCAGACCAAGTCCCCGGTGCCTTTAGATTGCCCCACTGCCTGCACGTGTAATCTTCAAATTTCAGACCTGGGCCTGAACGTGAACTGCCAAGAGAGAAAAATAGAGCGCATCTCTGATCTACATCCCAAACCGTACAATCCTAAAAAGATGTATCTCACGGGGAATTACATCACAGTGGTGCGTCGGTCAGATTTCATCGAGGCGACCACTCTCGATTTGCTCCATCTGGGTAATAATCGAATAGCTCATATACATGACAGGGCGTTCGGCGACCTGACACATCTACGCCGGCTGTACCTGAACGGCAATTTAGTGGAACGTCTCACAGGCGATATATTTTATGGATTGGAGAGCCTACAGTTTTTATATTTGGAATACAATGTCATTAAAGAGATTGATATTAACACCTTTCGTCACGTCCCCAACCTTCAGCTGCTCTTCCTCAACAACAACCTATTAAAAACGCTCCCCGAGGGTACGTTTAACGGCCTGATGTTGGCCCGACTGAATCTCCGCAATAACCACCTCCGATCGCTGCCTGTCAGAGGCGTGCTGGACCAGCTGACCGCCCTGGTGCAGGTGGATCTGTTCGAGAACCCCTGGGACTGCTCCTGCGCCATCCTGGACCTGCGGGCGTGGCTGGAGCAGCTGAGCACTGGCACGGTCATGAACAACGTCATCTGCAGCTCGCCCAAGAAGCTGTCGGGGGAGGACATGCGGTACATTAAGACGACCAATTTCTGCCCCGACAACTCCCCCGCCGCCGCCCCCGCCTCCTCTGCCTTGCCGCCCTCGGAGGAGTCGTTCCCCGGCAGCACCATCACCATCGAGACCTCGCTGGAGTCAGACGCAACGCCGCGCAATGCCATCCCCCTGTCGGTGCTCATCCTCGCCCTCCTCCTCATCTTCATTGTGTCCGTGTTCATCGCGGCGGGGCTGTTCGTGGTCATGAAGAAGAGGCACCAGAAGGCCCAGAACGAGCAGAACAACTCGGTGAACGCCTGCATCAGCTCCCTGAACATGGAGTACGGCCTCTACAAGAAGGCCGCCATCCCCAAGATCAGGACGTCTGCGGGCCACGTGTATGAGTACGTCCCCCCGCCCCCCACGGAGCAACACATGGCCCAGCAGAGCGCCGCCTGCACCCCGGCTGAGGGCAAACCACTGGGGACTTATAGAGATTTTGAGGATTTAGGCGGTTTACCATTCCTGGGCACCGGGGCCGTCGAGGAGCCCTCAAGCTCCGAGTACAGCACGACCCCGCTAGAGGCGGTGCTCAACAAGCGGTCTTCGTCCTCCACCTCCCAGGACGAGGAGTACTACTACAGGGATCTCTACAGGGAGCCAGACACGCGCGCGGCATATGGCGTCACCACGTTGCCATGCAGGCACAGTGCCCCTCCGTCCAGCCAATACAACTCAGAGGACTTTGAAGTGAGACACCAGTGCGTGCACCCGGACAGGCAACAACAACAACAACAGCAACAGACGATCTTGTACTGCACCAGCGCACCGAGTACCGGCGTGTACGTTCAGGAGCCCGGCAGCAGGAGCGAGTACTGGGAACTGAAAGCCAAACTTCACATTGATCCGGATTACCTGGAAGTACGCGAGAAACGCACAACATACTCACAGTTTTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043326	Family	Slitrk family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45773	SLIT AND NTRK-LIKE PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007409	Biological Process	axonogenesis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0051965	Biological Process	positive regulation of synapse assembly	Interproscan
GO:1905606	Biological Process	regulation of presynapse assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-