Gene detail

Detailed information of KAG7282711.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7282711.1	NUCLEOPORIN	PIJE02000018.1	880017	959972	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7282711.1

ATGGTGACCTTCTCCACCTCCACGTTGCGCTGCTCCTCCTGGGCCTTCTGGAGCCTGGCGGGGGGGGAACCAGAGTCACCGATGAGGAACACCACCACCCCACCCACACCCACCACACAGACAACCTGGAGCAGCAGGGGTGCGACTTTTCAAGCTGCAGACAACGCCGTCACCAGTTGTGACGGCGTGTTCGCCTGGAGCCCGAGTTCACTGAGGGGGCAGGTCAGAGGTCAGCGGGTTGTCATGCAGAGCATCAAGTGTGTCGTCGTGGGCGACGGAGCGGTGGGGAAGACGTGCCTCCTCATCTCGTACACGACAGGAGCCTTCCCCAAAGAATACATCCCCACTGTGTTCGACAACTACAGCAGCCAGGTGACGGTGGACAGCAGGACCATCAGCCTGAACCTGTGGGACACGGCAGGCCAGGAGGAGTACGACCGCCTGCGGACACTCTCCTACCCCCAGACCCACGTCTTCATCATCTGCTTCTCCATCTCCAGCCCCGCCTCCTACGAGAACATCAAACACAAGTGGCACCCGGAGAGCGACCTGCGGAACGACGGCGAGACTCTGAGGAAGCTCAAGGAGCAGAACCAGCCAACCAAGATGTTCAACAAATCGTTTGGTGCTCCTTTTGGAGGAGGGACGGGAGGATTTGGGACTGCATCTACTTTTGGACAGCAAAACACTGGCTTTGGAACCACTGGAGGATTCGGGGCTTCTGCATTCGGACAAACCAGCACCACTGGAGGCCTGTTTGGGGCAACACAGAACAAACCTGGTGGTCTCTTTGGATCCACTACCTTTAGCCAACCAGTGACATCCTCCACCAGCGCTGGCTTTGGGTTCGGTGCGGCTAGTGGAACCTCCACTAGCCTGTTTGGTAGCGCCAACACTGGAGCAGCCACAGGACTCTTCTCCCAGCCCAGCAATGCATTTGGGGCCAGCAAACCAGCTGCTTTTGGCACGTTTGGGACGAGCACAAGCACCGGAGGGTTGTTTGGGTCAACCAACACCGCCTCCAACCCGTTTGGGGGTGCTGCCACAGGCTCCCTGTTTGGAGCGCCTGGGTTCACTGCGGCCCAGCAACCAGGAACGGCCCTCAAATTCAATCCTCCAACAGGAAGTGACACCATGGTGAAGAGCGGTGAGCTGCGTTTGGAGGACTACCAAGCAGGGAGGAAGGGCTCAACCAACCCCATGGCAGCAGCAACAGGTGGTCTGTTCGGCGCCGCGGCGCCAGCCACCGCCACTGTCGCCACAGGCCTCTTTGGCTCTGCAGCCACAAACACGGGCTTCTTTGGACAGGCCAAGACCGGCTTCGGCGCCAGTGCTGGTGGGTTTGGTGCGGCTACTGGGAGCCTCTTTGGCCAGCAGACCCCACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAACAACAGGCCGTGGCCGGTAGCCTGTTTAAGCCCTTTGGTCAGGCCACCACAACACAGAACCCAGGCTTCTCCTTTGGCAACACAAACACCATGGGCCAGGCCAACACCAGTACCATGGGGTTGTTCGGTAACACCGTTGCTTCCCAGGCGGGTGGGCTGTTTGGCGCCACGGCTCAGACCAGCACGGCCACCGGGTTCGGCACGGCCACCGGGCTGTTCGGACAAACCAACACAGGATTCGGCACCGTCGGCACACAGCAGAGCCTGTTCGGCAACAAGCCGGCAGGCTTCGGCGCAACCACCACCAGCACCCCGTCCTTTGGCACGGGCACCAGCCTGTTTGGCAACAAGCCTGCCCTGACACTCGGGACTGGGACCAACACGTCCGCCTTCGGGTTTGGTGCCAACCCTGCCGGTGGGAATCTGTTCGGTAACAAGGCGACCGCAGGGGGCCTTGGGACGGGCCTGGGAGCTGGCTTCGGCGCAGCAGTAGGCACAGCCCAGACATCGTTGTTTGGCAACACCCAGAACAAGCTTGGTACCACTCTAGGAACCATGGGGACGTTTGGTGCCACTGGGTTCAACAGTGGGGCCAGCACTCTGGGCTTTGGGGCTCCACAGCAGCCTGTCGCACTGACAGACCCCAGCGCTGCAGCAGCTCAGCAGGCGGTGCTGCAGCAACAGATCAACGCGCTGGCCTACTCTCCCTTTGGTGACTCTCCCCTGTTCAGAAACCCCCTGTCAGACCCCAAGAAAAAGGAGGAGCGTTTGAAACCGACCAATCCAACGGCCCAGAAGGCTCTGACCACGCCCACCCACTACAAGCTCACCCCGCGGCCCGCAACAAGAGTGCGGCCCAAGGCGTTGACCTCGTCGGGGGCCTCAAAGTCTCAGCTGTTTGATGGGCTGGACGACGACGAGCCCTCCCTCACCAACGGAGCCTTTGTGCCCAGGAAGAGCATCAAGAAGCTGGTGCTGAAGAACCTCAACAGCAGCCTCTACAGCAGCCCCATCAGCAGAGACACAGACGACCTGGCCTCCCCCTCAGAGTACCCCCAAAATGGCCACAGCCACATGATGGACGATCAGGAAGCGCACGGTGCCATGACGGTGGGCGGGGAGAAAGCGGAGGATGACCTGGAAGTGAGCCAGTTCTACGTGAACCCCATCTCCAAGCCCATCCCCCAGGGCCGCATGCAGGCTGGCCTGCAGGACACCATCTGTGAGCTCAACATGCAGCGGGCCGCCAGGAACGGCCATGAGCTGAACAGTGAGGAGGTGTCTGTGTCTCTGGGAGAGGAGTCCCTGCAGGAGGACCGAGAGGAGGAGGATGAAGAGGTGGTGGATGACGCTCAGCTCTCTCCTCATCCAGCTGAGATGGTGGACCACAACGGCCAGTGTGTGGTGGAGAACTTTACCGTGGGCAGGAAAGGCTACGGCTCGGTGTTCTTCTGCGGGTTGGTGAACGTGACGGGCCTGAACTTGGACGAGATCGTACACTTCAGACGCAAGGAGGTTATAGTCTACCCTGATGACAAGAACAAGCCTGCCGAGGGGGCGGGGCTAAACAGACGGGCTGAGGTGACCCTGGACGGCGTGTGGCCCAACGACAAGACCACCTGCACCCAGATCAAGAGCCCGGAGCGGCTGGGTGACATGAACTATGAAGGCCGCCTGGAGAGCGCCTCGCGCAAACAGGGGGCCCGCTTCCTGGAGTACCGACCCGAGACCGGCTCCTGGGTGTTTGAGGACTCCGATGAAGAGGACGATGTGCCGTCCAAAGCCGATCCCAAGAAACTGAAGATGATGACATCACTTCCTCCCTCCAAGCTTCTCCTGCAGCAGCTTCCCCCCTCGCAGCAGGTGGCGCCACAGGCTCAGTCCGTTAATGAGCTGCCCAGCGGCCTAGCGGAGCTGGACAGCGACATGGCAGACATCACCCAGGGCACCCTGCAGGCAGACTGCATGCTGGGAGGAGATGAGGACTGGGTGTTGGACAGCAGCAGCCGCCTCGCCAGCCTTATTCCCTCCGAGCAGGAGCCCCTCTCTGCCTCCGGGCAGATCGCCTCCTCTCTGGGGATCAACCCGCACACCCTGCAGATCATGAAGGCCTCTCTGTTTGCTGAGGATGACGATGAAGGGGACATGTTCCAGGAGCAGGGCCTGACCTCGGAGATCTCCTCCCCCCGGCGTGTGGTTCCCAGAGTGCAGACCAGGCCCTCGGTGGGCGGTCTCCTCCAGGCTCGGTTCTCGTCTGGCCTGCTCTCCCACCAGGCCCCGGACGCCTCTCTGCGAGAAGGCTCTCCCTCCTCGGCCAAGCTCCTGCCTCCCCTCTCCCGGGCGTCCCCGGTGAGGGCGGAGACCCCCCGCTGTTTCTCCTGGAGCGCCGCCCCCCCACCGACCACCTTCCTCCTGCCCGCCCGGGCCCCCGAGCCCTCCATCCGCACCGTCGGGGCCCGCCGGCTGGGTGGGCCCGTGGCCATGAAGGAATCCATCACGCTCGGAAAGGGATCCCTGCTGATGGACGCGGGCCTCTTCATGGGCCGGTCGTTCCGTGTGGGCTGGGGTCCCGGCTGGATGCTGGCCCACTGCGCCGAGCAGATCAGCGCGCCCCACGCCAAGGAGCAGCCTCCCAAAGGCCACGCAGATGCAGACTTCAGCTTCCTGCCTAAACCAGTGCGCAGCAAAACCCTGACTGAGAGCCCCTTCAAGGTGGTTCTGGAGCAGGTGTCGGGTGTGGGGCCAGACGAGCACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAGGAGTCGGCGTCCAGGCTGGCCGTGCTCCAGCGGCCCCTGGAGATCTGTCTGAAGCACAGCACCGTCAGCACGCCGGAGGGGTGCACCTGCCCACTGGTGCAGCCCCAGCTGGGAGTGTCCGCCCTGCACGAGTACGCCCAGTGGATCAGCAGGCTGCCGCAGAAGGCCGACGGGGACGTGGTCCTGGGCTACTGGGCTGAGGTGTGGACCCTCTGCGAGGCTCTGTGGGGCCGACTGGGCTCCTCCTCCAACGATGACGACGACCTGGACCCCGACGACATAGAGTCCCCCGACGAGTACCTGCAGCAGCTGGAGCGCAGGCGGGCCTTCTCCTCCTGGCTGTCCCACGGCGCCGCGGGTCTGGTGGAGGAGGAGGTCGGCCATGCGGGGAAGGAGAGCCATGCGGAGGCCATCTTCAGCTACCTGACCGGTGGACGCATCAGCATGGCCTGCCGGCTCGCCCAGAAACATGGGGAACACAGGCTGGCTGTGCTCCTAGCCCAGGCCATGGGCTCCCAGCCCTGCAGGGAGCTGCTGGCCCTGCAGCTGGCCGACTGGAGCCGCATGCAGACGGACTGCTACGTGAGCGAGGAACGCCTGCGCGTCTTCGCTCTGCTGGCTGGGAAACCCGTGTGGCAGTCGTCCGAGTGCCTGGTGAACGTGTGCTCCGGCCTGGACTGGAAGCGCTGCGTGGCCGTCCACCTCTGGTACATGCTGCCCCCCACCGCCTCGGTGGCCGACGCCCTCGCCAAGTACCAGGACGCCTTCCAGGGTGCCGGGGAGATGGGGAGGTACGTGTGTGCTCCTCTGCCACCTTACCTGGACGACTCCGAGCTGGTGGGCATGGACCTGGAGGAGGGGGAGGAGCCTGGCAAGCGGCCGTTGTACGACATCTGCTTCCACCTGCTCAAGCTCTACAGCGACAGACACTACAGCCTGCAGCAGCTGCTGGACCCCCTAGCAGTCACCTGGGAGCGTCTGGACTACCGGCTGAGCTGGCACCTGTGGGGCGTCCTGCGGGCGCTGCAGTACAGCCACCTGAGTGCTGCGCGACAGGCCCTGCTGCACACCAGCTACGCCGCCCAGCTGGAGAGCGCTGGCCTCTGGCACCTGGCCGTCTTCGTGCTGCTGCACATCCCCGACCACGCGCTCCGGGAGCGTGCCGTGAGGGAGATGCTGAGCCTCTACTGCCCCCTGCTGCCGACGGAGGAGTCTGCGCAGCAGGAGCACTTCCTCACCCAGAGGCTGCTGCTTCCTGAGCGGTGGCTCCACGAGGCCAAGGCCATGCGGGCCCGCTGTGACGGGGACCACCACCTGGAGGCGCTGCACCTCTACCGGGCCGGCTGCTGGAACCCCTGCCACAAGCTGCTGATCCAGCACCTGGCGTCAGACTGCATCATCAACGACAACCACGCCTACCTGCTGGAGTTCCTGGACGGCTTGTCCCCGCCGGAGCGCAGCGTCACCATCCAGGACTGGGAGACGGCGGGCCGCGTGTACCTGGACTATATCCGGGTCATCCAGAGCCTGCAAGACATCCAGCAGATGGACAACCCCGGCTACGAGGTGGAGCGCCTCTACACGGACGTCACCTCCCTCTGCAGCCGGATCCAACTGCTGCCCTGCTCCACCGCCAAGGACCGCCTGGCCCAGTCTGAGATGGCCAAGCGTGTGGCCAACATCCTGCGTGTGGTGCTGAGCCTGCAGCAGGCCGGCGAGGGCGGAGCAGAGTCCCTCCTCCACCTCCCCCTGGCCCAGCTGGCGCCCCACGTAACCCGCCTGCCCATGCCCGAAGACTACACCCTGGAGGAGCTCCGCGGACTCACCCAGTCGTACCTCAGGCAGCTTAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAGAAGAAGTCCTCACTAGCAGAATAG

Transcript

Protein

KAG7282711.1

MVTFSTSTLRCSSWAFWSLAGGEPESPMRNTTTPPTPTTQTTWSSRGATFQAADNAVTSCDGVFAWSPSSLRGQVRGQRVVMQSIKCVVVGDGAVGKTCLLISYTTGAFPKEYIPTVFDNYSSQVTVDSRTISLNLWDTAGQEEYDRLRTLSYPQTHVFIICFSISSPASYENIKHKWHPESDLRNDGETLRKLKEQNQPTKMFNKSFGAPFGGGTGGFGTASTFGQQNTGFGTTGGFGASAFGQTSTTGGLFGATQNKPGGLFGSTTFSQPVTSSTSAGFGFGAASGTSTSLFGSANTGAATGLFSQPSNAFGASKPAAFGTFGTSTSTGGLFGSTNTASNPFGGAATGSLFGAPGFTAAQQPGTALKFNPPTGSDTMVKSGELRLEDYQAGRKGSTNPMAAATGGLFGAAAPATATVATGLFGSAATNTGFFGQAKTGFGASAGGFGAATGSLFGQQTPQQQQQQQQQQQQQQQQAVAGSLFKPFGQATTTQNPGFSFGNTNTMGQANTSTMGLFGNTVASQAGGLFGATAQTSTATGFGTATGLFGQTNTGFGTVGTQQSLFGNKPAGFGATTTSTPSFGTGTSLFGNKPALTLGTGTNTSAFGFGANPAGGNLFGNKATAGGLGTGLGAGFGAAVGTAQTSLFGNTQNKLGTTLGTMGTFGATGFNSGASTLGFGAPQQPVALTDPSAAAAQQAVLQQQINALAYSPFGDSPLFRNPLSDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALTSSGASKSQLFDGLDDDEPSLTNGAFVPRKSIKKLVLKNLNSSLYSSPISRDTDDLASPSEYPQNGHSHMMDDQEAHGAMTVGGEKAEDDLEVSQFYVNPISKPIPQGRMQAGLQDTICELNMQRAARNGHELNSEEVSVSLGEESLQEDREEEDEEVVDDAQLSPHPAEMVDHNGQCVVENFTVGRKGYGSVFFCGLVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGAGLNRRAEVTLDGVWPNDKTTCTQIKSPERLGDMNYEGRLESASRKQGARFLEYRPETGSWVFEDSDEEDDVPSKADPKKLKMMTSLPPSKLLLQQLPPSQQVAPQAQSVNELPSGLAELDSDMADITQGTLQADCMLGGDEDWVLDSSSRLASLIPSEQEPLSASGQIASSLGINPHTLQIMKASLFAEDDDEGDMFQEQGLTSEISSPRRVVPRVQTRPSVGGLLQARFSSGLLSHQAPDASLREGSPSSAKLLPPLSRASPVRAETPRCFSWSAAPPPTTFLLPARAPEPSIRTVGARRLGGPVAMKESITLGKGSLLMDAGLFMGRSFRVGWGPGWMLAHCAEQISAPHAKEQPPKGHADADFSFLPKPVRSKTLTESPFKVVLEQVSGVGPDEHDEEEEEEEEEEGEESASRLAVLQRPLEICLKHSTVSTPEGCTCPLVQPQLGVSALHEYAQWISRLPQKADGDVVLGYWAEVWTLCEALWGRLGSSSNDDDDLDPDDIESPDEYLQQLERRRAFSSWLSHGAAGLVEEEVGHAGKESHAEAIFSYLTGGRISMACRLAQKHGEHRLAVLLAQAMGSQPCRELLALQLADWSRMQTDCYVSEERLRVFALLAGKPVWQSSECLVNVCSGLDWKRCVAVHLWYMLPPTASVADALAKYQDAFQGAGEMGRYVCAPLPPYLDDSELVGMDLEEGEEPGKRPLYDICFHLLKLYSDRHYSLQQLLDPLAVTWERLDYRLSWHLWGVLRALQYSHLSAARQALLHTSYAAQLESAGLWHLAVFVLLHIPDHALRERAVREMLSLYCPLLPTEESAQQEHFLTQRLLLPERWLHEAKAMRARCDGDHHLEALHLYRAGCWNPCHKLLIQHLASDCIINDNHAYLLEFLDGLSPPERSVTIQDWETAGRVYLDYIRVIQSLQDIQQMDNPGYEVERLYTDVTSLCSRIQLLPCSTAKDRLAQSEMAKRVANILRVVLSLQQAGEGGAESLLHLPLAQLAPHVTRLPMPEDYTLEELRGLTQSYLRQLRGVCVCVCVCECEKKSSLAE

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF04096	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF12110	Nup96	Nuclear protein 96	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR007230	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR021967	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036903	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-