Gene detail

Detailed information of KAG7282658.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7282658.1	TRANSCRIPTIONAL REGULATOR ATRX	PIJE02000018.1	326717	356674	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7282658.1

ATGTCTGCGCGGATAGCCGGCCCACCTGTCAGCAAGCTGAATGTCCTGGTGAACAAACTCCAAGAGTTCCTGGCGCATTCTCCACCAGAAGAGGACATTCCAGAAGGAACCGTTCTGGTGAGGCCTGAGCCAGTGGACAACGGCAGAGATGACTTCAGGGGTCCAGAATTCCGCAGGTCCGGGGTCTCCAGGAGGGAATTCTCCAGGAAGAGAGGAGGGGCTGAGAATCACGAGATCGTGAGCTGCACAGCATGTGGTCGTCAAGTGAACCACTTCCAGAGAGATTCCTTCTACCCCCATCCCGTCCTCAAAGTACTCATATGCAAGTCTTGCTTCAAGTATTACTCGAGCGATGACATAAGCAAGGACAGCGATGAAATGGATGAGCAGTGCAGATGGTGTGCTGAAGGAGGGAACCTGATCTGCTGCGACTACTGCAGCAATGCCTTTTGTAAAAAGTGCATCTTACGGAACCTGGGTCGAAAGGAGCTCTCGGGTATCCTGGAGAGCAAGTGGTACTGCTATGTTTGCAGCCCAGAGCCTCTGCTGGACCTGGTGGTGGCCTGCAACAGCGTTCTGGAGAACCTGGATTGTCTAAGCCAACATCACCATCACCGGAGGCACCAGGCGGAGCCTGAGAAGGAACATGACGACATGCTGCCGCCACTGCCCCAGATAATCTCCTTCGAGAAATGGAGCCACAGCTCCATGGACGGCAACGTGGTGTTCAACTACAATGCCTTGGATGTCCCCAAGGACCTCATGAAGAATGCCAAACACCTCATGGATTCCACCAACGCCCTGAACAGAACATTTGTGGAGTTTATCAAGAGTGTGAGAAATGGCAAACGCACTTGCAACGCTCGCCCGCTGTACCTAAAGTCTTTCCTGCTGGTGCTGAAGGGCCTGAGGAAGTCCCATGCGCTGCTGGAGGAGAGCCTGAAGGAGGAGTTCTGTGATGTGGACATGGTCAACTCCTGCGACAGCACTCTCCACGAAGACTTGGACGCAGAGCAAGAGCTGTCGCGGGAAGCAGAGTCCAAGATGGACCTTGCGGATGAATGTAGCTTGGCCGAATTGCAGAATCTGGCTGCCGAGCATCTGGACAAGGATGACTCTGACTCCAAGAGGCTCACGCACGAGGTGAAGGACTTCTTCGCAGAGAAATCCACCAGTCAGGACGCGGCTACGTCGCCACCGCAGCCCGTGCTCATACACCCAAAGACGGACCTGAAACGTTCTCACGGTTTGCTCAGCATGAAAACACTAGTGGTGAAACTCATACAGGTGCCTGTGGAACAACAAGAACAAGTGGCTTGTATTGCCATGGGTGAGGGTGCCACGGTCTCTTCCATGGAAGCTCAAGGGACATCGGGAGCAGAGGAGAAATCTCAAGATGTGGGCGTCTGTCTGCAGAACGACCGAGAGACGGAAGCAGCTCCCTTAGAGGTGGGCGAGGCGTTGCGGCCGGAGGAAGAGCCGGACAACAGAAGATCTCCCAGGGTGAAGACCACGCCCTTGCGCCGCCCCAGCGACGTCAAGCCCAAGCCCTCTGTGTCCACCAATGACAGTGGCAGTGACTCTGACCCCGGGATTGGCGACACGGACGCCAACCTGGCCTCCGACGCCTCGGCCCGTGGGTGCGGGGACTCAGACGAGGAGTCTGACGAGGTTCCCGCCGCCCTGCTGCAGCGTGCCGCTATGACACACAGCTCTGATGATGACGTGGTGATCGATGACGCGGCTCCGCGGCCCACACAGGTGGCGAAGAAGTGCCTGATTCGGCTCTCCACGGCCACGCCCCTGTCGCCCAAAAGGGTTTACCGCAAGCGCAAGGTGCTATACCCCGAGGCCAGCGGGAGAAAAGCCAAAGTCCGGAGGGTCGGAGGCTCGAACTCGTCCAATGACGACCTGAAAGAGGAGAAGGAGGCCGCCAGTTCCCTTGTCGACCAGCAAGTGCCTCTGGGCGCCCAGGATGCCGCCAGTGCACCCACGCCGTCCGACAACCCATCCAAATGCCCGAGGGAAAACCAGGACTCCTCCTCCCCTTCCTCTTCCTCCTCCCCCTCTGCATCTCGGAGCGAAGGAGAAGAAGTAGAGCAGGTCATGGGGAGTGACTCTGACGACCAGCGCATAAAGCCCATCACAGAGACTGTGTCCATGCTGGGAGCTTCGGGGTTCCAGCAGTCATCTGGTGATGAAGACCAATCCCACTCTGGGCCCTCTTGGGCAGCAGAAGATGATGATGACCCAGAAAATAGAATCGCTAAGAAAATACTCTTGGCCCAAATCAAAGCCAACTACTCATCGGGGGACGATTTGACATCGGACGAGGACACGCAAGACGAAGAAGACTCTGTCTCGGAGGCAGATGAGGGGGTTAAGGAGGACAGGATAGATGGAGATGATGAAGAGGAGCAGTCTGTGGCGGGGTCAGAGGGCTCCAGCAGCAGGTCAGACGTTCCCGGCAGCAGACATCACCTCCTCAGACACAAACTCTCCCTGGAGGACCCAGTCCCTACTGACAAGACCCCCGGCCAGCCAGAGGGCAAGAGGGCCGCCAAGACCCCCAGAGACCCTGACACTGACGGAGACAGCAGCGGGAAGGACAACCAGGATCTCAGCGAGGAGTTGAGTCTTTCAGAGGTGGACGAAGGTGATGATGAGGGGGAGGATGACGAAGAGGGTAGTGGAGACAGATCCAAAAGCGGGAGGTCTTCCAATGTGGACAAGGGGGCCACCCGGAGCTACCTCCAGAAGAAACCCTCCCCCTCTTACATCGTGCTGTCCGACTCTGACACTGAGAAGGAGGAAGAGGACAGCAAGACGACGTCAAAGGGGAGGAGGAAGATCCGCAGCATCATCGACGACGAGAACCTCCGCGTGGAAACGCTGGAGGCTCTGAAGGAGGAGGAGGAACGGAGGCAGCGCCTGGCCAACCGCGAGCAGCAGAGGGAGGTTCTCCGGGAGGTGATCGTCATCGAGGATGAGCTGTCCCAGGTGGCTCAGCCAATCACCACCAAGCTAGTCCTGGACCTGGACGAGTCCACCAAGGAGCCGCTGGTCCAGGTGCACCGCAACTTGGTCACACGCCTCAAGCCCCACCAGGTGGACGGGGTTCAGTTCATCTGGGACTGCTGCTGTGAGTCTGTGCAGAAGGCCAACTCCTCCCCAGGCTCCGGCTGTATCCTGGCTCACTGCATGGGCCTGGGCAAGACCCTACAGGTGGTCACCTTCCTGCACACCATGCTGCAGTCCAAGATCCTGCGCTTCCGCACCGCCCTGGTGGTCTGTCCCCTCAACACCATCCTCAACTGGGTCGCAGAGTTCAAGAAGTGGCAGGACGGCATGGGCACCGACCGGGTCATGGTGACTGAGCTGGCGACGGTGAAGTATGCCCACGGGCGTCTGCAGGCGCTGCAGCGCTGGCACCAGGAGGGAGGGGTGATGATCGTGGGCTACGAGATGTATCGCAACTTCTCCCTGGGCTACAAGATCAGCGACGCCCAGGTCAAGAAGACCTTCCACACCGTCCTCGTCTCCCCCGGTCCGGACTTTGTGATCTGTGACGAGGGCCACATCCTGAAGAACGAAACGTCCAACATCTCTAAGGCCATGAGCGCCATCAAGACACGCCGCAGGGAGAACCTGCTGGGGTCTCTGAAGGAGTTCAGGAACCGCTTCATCAACCCCATCCAGAACGGCCAGTGTGCCGACTCCACCCCCCGAGACGTACGCATCATGAAGAACCGCGCGCACGTCCTGCATGCCATGCTGGCCGGCTGTGTACAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF17981	ADD_ATRX	Cysteine Rich ADD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR025766	Domain	ADD domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR041430	Domain	ATRX, ADD domain	Interproscan
IPR052131	Family	ATRX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46357	TRANSCRIPTIONAL REGULATOR ATRX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:1901582	Biological Process	obsolete positive regulation of telomeric RNA transcription from RNA pol II promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-