Detailed information of KAG7282508.1 in Coryphaenoides rupestris Gene info
Gene IDAnnotationScaffoldStartEndStrand
KAG7282508.1PRE-MRNA SPLICING FACTOR PRP8PIJE02000022.1756426778744+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Jab_MPN

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01398JABJAB1/Mov34/MPN/PAD-1 ubiquitin proteaseFamilyInterproscan
PF08082PRO8NTPRO8NT (NUC069), PrP8 N-terminal domainDomainInterproscan
PF08083PROCNPROCN (NUC071) domainDomainInterproscan
PF08084PROCTPROCT (NUC072) domainDomainInterproscan
PF10597U5_2-snRNA_bdgU5-snRNA binding site 2 of PrP8DomainInterproscan
PF10598RRM_4RNA recognition motif of the spliceosomal PrP8DomainInterproscan
PF12134PRP8_domainIVPRP8 domain IV coreDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000555DomainJAB1/MPN/MOV34 metalloenzyme domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR012591DomainPRO8NT domainInterproscan
IPR012592DomainPROCN domainInterproscan
IPR012984DomainPROCT domainInterproscan
IPR019581DomainPre-mRNA-processing-splicing factor 8, U5-snRNA-bindingInterproscan
IPR019582DomainRNA recognition motif, spliceosomal PrP8Interproscan
IPR021983DomainPRP8 domain IV coreInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR037518DomainMPN domainInterproscan
IPR042516Homologous_superfamilyPre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyInterproscan
IPR043172Homologous_superfamilyPrp8 RNase domain IV, palm regionInterproscan
IPR043173Homologous_superfamilyPrp8 RNase domain IV, fingers regionInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0008233Molecular Functionpeptidase activityInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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