Gene detail

Detailed information of KAG7280305.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7280305.1	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	PIJE02000071.1	530267	547467	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7280305.1

CTCCGGAATCATAAAGCGATCATCTGTAAACGACGTGTGGGGCGATCGTGGGGTCTGTGTGGGTCCGGCACCGTCATCATCACCGTCATCATCCTCCTCCTCCCGTTTGGTGGCTCCTCTTTACCATGGCAACTCTCAGCACACGGACCCTACATCCAGATTATAGAGGAACCCAAGCAGAGGGGCTTCAGGTTCAGGTATGAATGTGAGGGCCCCTCCCACGGGGGTCTCCCGGGGGCGTCCAGTGAGAAGAACAGAAGAACCTACCCCACCGTGAAGGTGAATAACTTTGTGGGTCATGCGCGGGTGGAGGTGCAGCTGGTGACCCACAGCGACCCCCCGCGAGTGCACGCCCACAGCCTGGTGGGCCGGCAGTGCACAGAGAGTGGCACCTGCACGCTGGACGTGGGTCCCAACGACCTCACCGCCTCCAACCTGGGCATCCTCCATGTGACCAAGAAGGGTGTGTTGGAGGTTCTGACCCGGAGGCTGAGAGACGAGAGGAGACGACAGAAGGGCCTGCACCACCTCTTCACTGATGCTGAGGAGAGCTCCATGGTGAAGGAGGCCAAGGAGCTGGGGAAGGTGATGGACCTGAACATCATTTCTCGCATGGACAAGACGTGTGGCTCGGTGCTCGGAGGAGAGGAGATCTTCCTGCTCTGCGACAAAGTCCAGAAAGAGTCTCCCAACGCCTCCAACCTGAAGATTTCTCGCATGGACAAGACGTGTGGCTCGGTGCTCGGAGGAGAGGAGATCTTCCTGCTCTGCGACAAAATCCAGAGGTCGGTCACCGTGTTCCTGCAGCTCAAGAGGAAGAAGGCGGGAGACAGCAGCGACCCCAAGCATTTCACCTACATCCCCCACGTACACGATAAGGAGGAGGTGCAGAGAAAGAAGCAGAAGCCCCTCCCCCACTATGAGCCGCTTCCAGTTCAACCAGCACATGAATGGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTTACACAGGAAGCTTCAACAACTATGGGGGAGGGGCCCAGATGTCAGGCCCCACCCCTCAGACGTCGGGCTCCGGAACCCCGGCCCAGGCCCTGCTCCAGTACTGCAGCTCTGGGGACCCCCGGGTGCTGCTGGCCCTCCAGAGACACCTGTGTGGTGTCCAGGACCAGAACGGAGACACCCACCAGGACAACGTCCTCAACACGCCTAACCAGCTCAGACAGACTCCGCTGCACCTGGCGGTGATCAGTGGCCAGGTGAGGGTGGTGGAGGGGCTGCTGAGGGCAGGGGCGGACCCCAGCCTCGTGGACCTCGACGGCCGCAGCCCCCTGCACCTGGCCGCCATGTCAGCTGACGAGGCCTTGCTCCGCCCCCTCCTGGCGCACCTGGGCGAACGCCACGCCCACCTGGTCAACACGGCCGACTACCATGGGCTCCACCCCCTCCACCTATCTGTGAGGAGGGGTGGCGAACGCTGTCTCCGCCTCTTGGTTGGGGGCGGGGCCAAGATCAATGCTGGCGAGCAGAAGAGTGGGAGCTCCGCCCTCCACCTGGCGGTCAGAGACAACCTTTTCAAGGTCGCCTGTTTCCTCATCACAGAGCTGAAGGCAGACGTCAACATATCGACGTTTGGAGGGAACACTCCGCTCCACCTGGCGGCTAGCCTGGGATCCCCCACCCTCTGCTCCATGCTCATCGCTGCAGGTGCGGATAAGAACCTGGAGAATGACGAACCTCTCTCCATCAGCTCCTCCTCTTCCTCAGACGAAGACCAGGAAGAGGAGAAGCCAATCAGAGCACAGCACCGAGTCCCGGAGGCCACCTCGCAGCCAATCAATGCTCGCAAGAGGCCGGCGCCTGGCCACACCCCTCTGCACCTAGCCACCTGTCAGAAGGTTAAAAACCTCTTGGACCCCAGGCACAGTCCCAGGACGAGTCGTCATAGCAACAAAAAGATAAAGTCCAGCAGTCCAGAGCCCCAGGCGGGTGTCCTGGACGGGGACACCCTGGCCCAGCTGCTGGGGGTGCTGAGCGTGGGCGAGGTGCCCTGGAGGGCGCTGGCCGAGCGGCTGGGCATGATGACCCTCGCCCACCTGTACCAGGACAGCCCGTCGCCATGCCAACACCTGCTGCACAGCTACCAGCCTATGGAGGAGGTGGTAGAGGAGCCCCCGGTGGCCAATCAGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	RHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00554	RHD_DNA_bind	Rel homology DNA-binding domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000451	Family	NF-kappa-B/Dorsal	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011539	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR030492	Conserved_site	Rel homology domain, conserved site	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR037059	Homologous_superfamily	Rel homology domain (RHD), DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24169	NUCLEAR FACTOR NF-KAPPA-B PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-