Gene detail

Detailed information of KAG7279466.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7279466.1	MHC CLASS II TRANSACTIVATOR	PIJE02000094.1	665376	680445	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7279466.1

ATGGAGGAGGGTGTTAACCTGAGCTCCCAGTACGTTGACACTCGACTGGTCCAAAGGGACGACCTACGCTTGAGGAAGAAGAGCAACACATGCTTAGAGAAGGAACTCGCCGCCATGGGAGACATGGAGCGTAAGCAGTCATCTCTGGGGTGGAGCCAGATCTTTGAGAACTCAGCTGGATCACAACCCAAACGTTCAGTATTGGTCCTCGGCAATGCCGGGACAGGGAAGACCGCCCTGATCTGGAACCTGGGCCTTAAATGGTCCACCGGGTCCTTCCCCCAGTTTGACTTCTTCTTTCTGCTGGATGGTAAAGGCCTCGCTCTAATCAATCCCGCCTTCAGTCTTCAGACCCTGCTGCTTGGCGGCCTATCCCCAGAGACGCCTCCGTGCCTGAACATTGATCTGGTCTTTGAGCGAGTCGCCGCTGCCCCCGAACGTGTCTTGGTTGTGTTTGATGGTTTCCAAGAGACTCGGCACCTGGAACATTTGATGCAGGCTCTTGAAAAGGACCTGGTGGCTGACCTCCAGATGGACAACAGGAAACAGGCCTTTACCGTGAGGAAGTTATACTCTGCCTTGCTCCAGAGGGTTCTCCTACCTGGCTGCACTTTGCTGATCGCAGCCCGGCCCAGAGGAGCCACGGGCCACCTTTGCCGATGGGCGGACAGCCTCTTGGAGGTCTGTGGCTTCAGCCCTGCAGAGGTAGAGGGTGCTCTACACCGGTACTTCACCAAACCAGCTGACCACGCCACCGCACTAACCCGGCTGGAGAGCAGCCCCTATCTGTTCAGCCTTTGCTGGAACCCAGCACTCTTTCGTTTGGTATGTTTGGTTCTGGAGCATTCAGAACATTCAGAGACCCTTCCCGACACACTCAGCGGACTTTGCCACCGAGCCCTGAGACTAAAGCTGACACAGGAGTTCAAGGACACGACCGGTAGTCGTACTCTGTGGTCAACCCGCTCGCACGGCAAGCTCATAAGCGATGCCTTGCTGGGGGGCCTTCGGAGGGTTCGGCAGCGGCCTCAGAAGGAGGAATTCAACCTTGTGCAGAGATTCAGCATCGGGACTCTCTTTCTGTCTCCAGGCAATCGCTCAGTCTCCAAGGACACAGTTGTCTCCAAGCAGGCCGCACTAGTCAAATACCTTGAGGAGGTCCTTGGCCATGGTGAACTTAGCAGCGCACCCTTGCTGGATGTGTGTCACTACATTTATGAGTCTGGCGTCGGCAGCGGAGACAGACTGCTTGCCGGTGTCCTCGACACGATCTTCCTGAGGGAGATGAGGTTCCAGGGAGTGAGAATGTGGCCGTCGGATGTGTATGTGTTGGGAAAAGTTCTGGAACAGGTGGGAACGGGGGGTGCTGGGATCTGCCTGGATCTGGAGGACACTGGGATACAGACTTCTGGAATTCTGTCGCTACTGGGGCTCAGCAACATTGTGACATACAGGGCATGCACTGCAGATGTCATCTCCCTGTGGGAGGAGCTGGAAGAAAAGGAGGAGGAGCTTCATCTTAAAGCTGCCATGTCCAAATACAAGCTGAACCTAAAGGCTACCCAGGTGTGTCATGTTGACAACCTAGCACGTCTTGTCAGCATGCACAGGAGACTGATGGCCAGCCAAACTGATCCTGTCCTGGCGTTGGGGGTTCCAGTGGTGAAGGGAATACACAAGCTGGAGTTGGACCTGGAGAACAGTCAACTAGGAGATAAAGGAGCGGGGGCACTGGCCAAAGTTCTGGTGTCGCTCTCTGATCTGGAGATGCTCAATCTGTCCCAGAACGATATTGGAGACAGGGGGGTGTATGACCTGTCACGCGTCCTGATGACCCCAGCCAAACTGCGTTGTCTCAGTCTGTACAGTAACATGATTTGTGATTCTGGAGCTCAGTGGCTGGCCAAAGTCCTTCCTCTGATGGTGTCCCTGACCAACCTGGACGTGAAGTACAACAACCTGACGGATGTCGGAGCACAGATCCTGGCAGCCAGCCTGAAGCAATGCCCCTCTGTGAAGACACTGAGGATGTGGAACAAGTGCATTCCATTCGGGGTATTTGAACGACTTCAGAAACAGGACAGCAGGATAGTGTGCCATTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47189	MHC CLASS II TRANSACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0045345	Biological Process	positive regulation of MHC class I biosynthetic process	Interproscan
GO:0045348	Biological Process	positive regulation of MHC class II biosynthetic process	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-