Gene detail

Detailed information of KAG7277521.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7277521.1	SH3 DOMAIN-CONTAINING	PIJE02000147.1	113747	151623	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7277521.1

ATGGATGAATCGGTTCTGCTGGATCTGCTGGAGTGCCCCGTGTGCCTGGAGCGCCTGGACGCCTCGGCCAAGGTGCTGCCCTGCCAGCACACCTTCTGCCGGCGCTGCCTGCAGGGCATCGTGGGCTCCCGGGGCGAGCTCCGCTGCCCCGAGTGCCGCACGCTGGTGGAGAGCGGCGTGGACGAGCTGCCCAGCAACATCCTGCTGGTGCGGCTGCTGGACGGCATCAAACAACGGCCGCGGCGTCCCGGCGGGGCGGCCGGGCCCTCTGCCGCCGCCGCCGCGGGTGCTGCAGGGACGGTGGTGGCGGCGTCCTGCTCCACCAACGGCACCGCGGGTGGCGGAGCGGCAGCCAGACCCCCGGGCGTCGGACCCAGGGGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGCCCTCGGCTGCGCAGCCCCAACGCGCCCAGTCCAAGAGCACCGTGGTGCGGGGCGTGCCCCAGCTGCCGTGCGCCAAGGCGCTCTACAATTACGACGGCAAGGAGCCTGGCGACCTCAAGTTCGCCAAGGGTGACGTCATCATCCTGCGGCGGCAGGTGGACGAGAACTGGTACCACGGGGAGATGGGCGGCGTGCACGGCTTCTTCCCCACCAACTTTGTGCAGATCATGAAGCCGCTGCCGCAGCCGCCGCCACAAGTGGATGAGAACTGGGCAGAGGGCATGCTGGGGGATAAAATTGGGATTTTCCCCATCTCCTACGTTGAGTTCAACACGGCCGCCCGTCAGCTGGTGGAGCTGGACAAGCCGTCCGACTCCGACGGGGGGGTGGAGGGACCGGCGGCGCACGGGGGTGGGGCCCCGCGCGGGGGGGGCGGTGGCGGGGAGAAGAAGAACACCAAGAAGAGGCACTCGTTCACCTCGCTCACTATGTCCCACAAGCCCTCGCTGGCCCCGCCCCCCCAGCGCCACTCCATGGAGATCAGCGGGCCGGTGCTCATCAGCTCCTCCAACCCCACCGCCGCCGCGCGCATCGGGGAGCTCAGCGGAGGGCTGTCCTGCAGCGCCCCCTCGCAGGTTCACATCTGCACCAGTGGGCTCATCGTGACTCCGCCCCCCAGCAGCCCGGTCACCACGGCAACGGTCTTCACTTTCCCCCCGGAGACGAGCTACACGTCGATCCATGTGAGCGGGAGACAGAGACCCACTGTCTACGTGGCCATGTTCCCCTACACCCCGCGTAAGGAGGACGAGCTGGAGTTGAGGAAGGGGGAAATGTTCCTGGTTCTGGAGCGGTGTCAGGACGGATGCCAGCCCAAGCTGCCGCTGACCCTGAGCTCCCAGCCCGGCCGCAGCCTCACCATCCTTGCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGGTTCCCGCCTCTCCGGGACCTGATGCCAGCAAGCCTCTCCCGCCGTGCCCCGGGCCGGTGGGCATGCCGCAGGCAGCTGTGGTTGCCACGGCGGCGCAGACAGCCACGGGTCAGCAGCCAAAGGTCATAGTTCACGTGAACTCCCAGATGACAGTGAACCAGGCCCGCAACGCCGGACGTGCCGGTCAGTCCGTCTACAGCGCCAGTAAGGCGGGACTGGAGGGCTTCACGCGCTCGCTGGCTAAAGAGGTGGCGTCCCGGGGGGTCATAGTTCACGTGAACTCCCAGATGACAGTGAACCAGGCCCGCAACGCCGTGCGCACCGCCGCAAACCACGGCCAGGACCGCCCCACGGCCTCGGTACCGCCCCTCCAGTCCGCGCCCCCTGGGGCCTTCCTGGCTTACCCCGCCCCCGCGCCCTGCTCTGGCTCCGCCCACGGCCCCTCCCGCGTGGGCGTGGCCCTGGGCTGTGCCTCCGCCTCCCTGACCCCGCCCAACGTCAGCGCTGCCTCGCTGGACGCCGACGGCCAGAGACACCTCGTCGGCCCCGGCAACGGCTCCCTCAACAACGCCGGCTTGCCGTTGTCATGCCGACTGGATAAGGATGCTAAGAGAGAAAAGAAGGGTCTGCTGAAGCTTCTGTCCTCCAACAAGAAGAAGAGCTTCATCAGGACGGACATGACGGCAGGGCTGATGCAGGAGTCGGCCGCCCAGCTCCTCTCCATCCCGCTGGGCCGGGTGGGGGAGGTGGAGGAGGTGGCGCAGGCGGCCGTGTTCCTCCTACTGTCCCCCTACGTGACGGGCCAGGCGCTGGTGGTGGACGGCGGCGTCTCGCTCCACATGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF13561	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050384	Family	Endophilin/SH3RF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0043066	Biological Process	negative regulation of apoptotic process	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-