Gene detail

Detailed information of KAG7276891.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7276891.1	SERINE/THREONINE-PROTEIN KINASE ATM	PIJE02000169.1	11298	84237	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7276891.1

ATGAGACTCTCCCGTGGGGACGGACGCGGTGACGGACGGAAGACACAAGAAGCAGAGTACCGCGACTGCAGCACCGAGCGCTTCTTCCACCGGACGTCCACCGGCGAGCTTTCCGCCAGGGCTGTACTCATCGACATGGAGCCTAAAGTGATCAACCACAGTATGAGCAAAGCGGCCAGGTCCGGCCGGTGGAGATATGGGGAGAAGTCACATTTCAGCCAGAAACAGGGCTCTGGCAACAACTGGGCCAACGGCTACTGTGTCCATGGCCCGCGGCACAGAGAGGTGATGGAGGACCTGGTGAGGCGGGAGGTGGAGCGATGCGACAGGCTGGCTGGCGTGGTGACCTTGATGAGCGTGGCGGGGGGCACGGGCTCCGGGGTGGGCACCTATGTCACCCAGTGTCTCCGGGAGCTGTACCCCAACTCCTTCATTGTCAATCACCTCACCTGGCCCTATGACAGCGGGGAGGTCATCGTGCAGAACTACAACTCGGTGCTGACGCTGTCCCACCTCTACGGGCTGTCGGACGCCCTCCTGGTGGACGAGAACGACACGGCGCACCGGATCTGCGCCCAGCTGCTGAACATCAAGCACATCTCCTTCACCGACATCAATGGGGTCATAGCCCACCAGCTGGCCGGGGTCCTGCAGCCCGCCCTCACCCCGGACTCCTATGGCCTCTACAGCAGAAACCCTCTGGGCATAGACTGGCAGGTGCGCGCCCCTCCGGTCCACTGTGGGGGCGCTGAGTCGGCTCGGGGCTTCAGAACAACAGGTTTTAACAGGTCTCTGGCCAACCTGCTCATACTGAGAGGGAAGGATGCCTTCAGTGCAGAAGCTGATGGCTTTCAGGAGGCCGCTCTCTACACCTCATGGCTTCCACCCACAGAGGCTTTCAGCGTGTGGAAATCCCCGGTTTCTTTCAATAAGTACGAGAGGTCTGCCACACTAGTCAGCAACAGCCAAACCCTGCTGAAACCTCTCGATAACATGGTGAGGAAGGCCTGGAACATGTTTGCTTCAAGGGCATACATCCATCAATACACCAAGTTTGGGATTTCGGAGGAAGTCTTTCTGGACAGCTTTACATCTCTAGAGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCAGGACGACCTGCGGCAGGACGCGGTGATGCAGCAGGTGTTCGCCATGTGCTCCACACTGCTGCAGCGCAACGCCGAGATGCGCCGCAGGAAGCTCAGCATCCGCAGATACAAGGTGGTCCCCTTCTCCCAGCGCAGCGGGGTCCTGGAGTGGTGCTCCGGCACTGTACCCATCGGGGAGTTCCTGGTGGACCCCAACAAGGGGGCCCACTGCCGCTTCCGGCCCCAGGACTGGACCAACCTGGCGTGTCGGCGGAAGATGATGGAGGCCCAGCGGCAGGGCTTCGAGGACAAGGTGACGGCCTACAGCGAGGTGTGCAGGAACTTCCGGCCCGTCTTCCGGTACTTCTGCATGGAGCGCTTCCTGGACCCGGCCGTGTGGATGGAGAAGCGGCTGGCCTACACCCGCAGCGTGGCCACCTCCTCCATCGTTGGTTATATTGTGGGCCTGGGCGACCGGCACATCCAGAACATTCTGATCGACGAGCAGACAGCAGAGCTCATCCATATTGACTTGGGCGTGGCCTTTGAGCAGGGCAAGGTCCTGCCCACCCCGGAGACGGTCCCCTTCCGGCTGTCCCGGGACATCGTGGACGGCATGGGCATCACCGGTGTGGAGGGGGTGTTCAGGAGGAGCTCCCAGGAGGCTGTTCTCACTATCGTCGAGGTGCTGCTGTACGACCCGCTGTTCGACTGGACCATGAACCCCCTGAAAGCCTTCCACCTGCAGCACGACGAGCAGCAGGAGCTCAACGCCACGCTGCACTCCACCCTGGGGGGCGGCGATGACATGGACGCCCACCGCAAGGCCAGCAGCAGTGACAGCCAGAGCTTCAACAAGGTGGCAGAGCGAGTGCTGCTGCGGCTCCAGGAGAAGCTGAAGGGGGTGGAGGAGGGGGCGGTGCTCAGTGTGGGGGGGCAGGTCAACCTGCTCATCCAGCAGGCCATGGACCCTAACAACCTCAGCCGCCTGTTCGCTGGATGGCAGCCCTGGGTGTAG

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan
PF00454	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan
PF02260	FATC	FATC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217	Family	Tubulin	Interproscan
IPR000403	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR002967	Family	Delta tubulin	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR003152	Domain	FATC domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR018936	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR036940	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR038980	Family	Serine/threonine-protein kinase ATM, plant	Interproscan
IPR044107	Domain	ATM, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37079	SERINE/THREONINE-PROTEIN KINASE ATM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-