Gene detail

Detailed information of KAG7274926.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7274926.1	LIM DOMAIN-CONTAINING PROTEIN JUB	PIJE02000243.1	27922	75803	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7274926.1

ATGCCAGTGCAGGGCGGAGAGCTCCCCGGCGGCATGGTGTTCCTCAAGGGAGAGCGTACTGGAAATTATTCCCCACGTGGCAGTCGTGCCGTCTCCGGTGTGGACTGCGTGTTCCACGTCGCCTCGTACGGGATGTCGGGCCGGGAGCAGCTGAACCGACGGCTGATCGAGCAGGTCAACGTCCAGGGAACGGAGAACGTCCTGAGGGCCTGCGTGGAGTCAGGCGTCCCCAGGCTGGTCTACACCAGCACCTTCAATGTGGTGTTCGGCGGTCAGGTCATCGAGAACGGGGACGAGAGCCTCCCCTACCTGCCCCTCCACCTGCACCCCGACCACTACTCCAGAACCAAGTCGATGGCCGAGATGGCCGTGATGCGGGCCAACGGAACCCCGCTCGAGGGTGGCGCCGGGGTGTTGCGCACCTGCGCCCTCCGCCCCGCCGGCATCTACGGGCCCGGGGAGCAGAGGCACCTGCCCCGGGTCGTGAGCTACATAGAGAGGGGTGTCTTCCGCTTCGTCTACGGAGACCCCGGCAGCCGGGTGGAGTTTGTCCACGTTGACAACCTGGTGTCGGCGCACGAACTGGCGGCAGAGGCTCTGAGCCCCGCCAGGGAGCCCAGTGCGGCGGGCCAGGCCTACTTCATCTCGGACGGACGGCCGGTGAACAACTTTGAGTTCTTCCGGCCTCTGGTGGAGGGCCTGGGCTACCCGTTCCCCACACTGCGCCTGCCCCTCTCGCTGATCTACTTCCTGGCTTTTCTTATGGAGATGATCCACCTCGTCATCGGCCGCCTCTACAACTTCCAACCGCTGTTGACGCGCACGGAGGTGTACAAGACGGGTGTGACCCATTACTTCAGCATGGGCAAGGCCAAGGCGGAGCTGGGCTACGAGCCCCAGCCGCACGACCTGGACGAGGTGGTTCAGTGGTTCAGGAGCCGGGGCCATGGGAAGAAGATCGGCCGTGGGACCTTCAGCCGGATACTGCTGGACGTGCTCCTGGTGTGTGGGTTTGTCGCTCTGGTGATGTCTTGCCTCCCGGGCAGGCTGGAGGCGCTGACCTTGGAGCTGGAGAAGGAGTTGGAGATGCACATGAAAAAAGAGTACTTTGGCATATGTATCAAATGTGGGAAAGGTGTATACGGAGCCAGCCAAGCCTGCCAAGCAATGGGAAACCTTTACCACACAAATTGCTTCACCTGCTGTTCCTGTGGGAGGCGGCTGAGGGGGAAGGCCTTCTACAACGTCAACGGCAAGGTCTACTGTGAGGAGGATTTCCTGTACTCTGGTTTCCAGCAAACGGCAGAGAAGTGCTTTGTGTGCGGCCACCTTATCATGGAGATGATTCTCCAGGCGTTGGGCAAGTCCTACCACCCTGGCTGTTTCCGCTGCGTGGTGTGTAAGGAGGGTCTGGACGGCGTGCCCTTCACTGTGGACGTGGAGAACAACATCTACTGCGTCAAGGACTACCACACGGTGTTTGCCCCGAAATGTGCCTCTTGCAACCAGCCCATCCTCCCCGCTCAGGGCTCTGAGGAGACCATCAGAGTGGTGTCCATGGACAGGGACTACCACGTGGCGTGCTACCACTGTGAGCTGAACGACGAGGAGGGCCACCGCTGCTACCCCCTGGAGGGCCACCTGCTGTGCCACGCCTGCCACATCCACCGGCTGCAGGCAGGGCCGCAACCGGGCCCCGCCCACCACCATGCCCCGCCCCACAGCTACCCGCTGCACCACAAGAGAGGAGGGGAGGGAGAGGAGGGGAGGGGAGAGGGGGAGGGGGAGGGGAGGAGCCACGTGGAGCACTGCCCGGCCCTGGGGGTCCAACACCACCCGGAGGAGACCACACAGAAACACAGACACACAGAAACACAGATACACAGAAACACACACACACACACATACAGGCAGCAAGATGAAACCATACTTACAGTCAACACAAATGATGAGAAGATTGGCAACCAGGCTGACACCCGGGCTGGCCCCGCCCACCTGCGATCCAAGCCCCAGACCAGCTGCATGCCACTGGTCCCCACTGCATGGCTCTGTGGCTTGCCCTGTCGATGGGAGAAGCGCTAA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412	LIM	LIM domain	Domain	Interproscan
PF01073	3Beta_HSD	3-beta hydroxysteroid dehydrogenase/isomerase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR002225	Domain	3-beta hydroxysteroid dehydrogenase/isomerase	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR047172	Family	Ajuba-like	Interproscan
IPR047245	Domain	Ajuba-like, LIM domain 1	Interproscan
IPR047247	Domain	Ajuba-like, LIM domain 2	Interproscan
IPR047248	Domain	Ajuba-like, LIM domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24219	LIM DOMAIN-CONTAINING PROTEIN JUB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0001666	Biological Process	response to hypoxia	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003854	Molecular Function	3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006694	Biological Process	steroid biosynthetic process	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0035331	Biological Process	negative regulation of hippo signaling	Interproscan
GO:2000637	Biological Process	positive regulation of miRNA-mediated gene silencing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-