Gene detail

Detailed information of KAG7273819.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7273819.1	UBIQUITINATION FACTOR E4	PIJE02000293.1	2097	65310	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7273819.1

ATGCCAGCCTGCCTCTGTGGGACCTGGGACATGGTCAGCAATGTCAACTTTGATGGATACATGGTTGCTCTGGGCATCAGTCCCGCGCTGAGGAAGACTGCTGTCAAGTTGAAGCTGAAGAAGGTGATCGAGGAGAGTGGGGATGTGTGCAGCATCAAGACCAAGAGCGCCCTCAGGAACTACAGCGTCTCCTTCATGCTGGGACACACGTTTGAGGAGATTGGACTGAAGAAGGATCGAGGCTGGGTTCATTGGATCGAAGATGATAAGCTGCATTTGGAGATGTATTGTGAAGGACACGTCTGCAAGCAAATTTATAAGAAGAGAATCCGCAGAAGGCGAGTGGCCAGACTTGCGGGAGGACCGACCTCTCAGCCTAGCACTCCTCTCAGCACACCCCTGACATCCCCACAGAGAGAGACCCCACCCGGGCCCCTGCCTGGACCCTCAGGGGCCACATCCCAGCCTCTGCCGCCAGCCTCCTCTCAGGCCCTGGGGCTCAATGTCCACAGTGTCACCCCGGCCACATCACCCATGGGTGCTTCTGGGGTTGCTTATGGGAGTCAAAGCAGTGAAGGAGTGAGCTCTCTATCCAGCTCGCCCTCCAACAGCCTGGAGACGCAGTCCCAAAGCCTGTCCCGTTCCCAGAGCATGGACATCGACACCGCCTCCTGTGAAAAGAGCATGTCCCAGGTGGATGTGGACTCGGGCATAGAGAATATGGAGGTGGATGACGGCGACCGCAGGGAGAAGAGGAACTCGGCTGACAAGGAGTCCTCGGCCAACTCAGATGTCTCTGAAGAGCAGGCTCTGCAGCTCATCTGTAGGATCCTCCGTGTCTCCTGGAAGGAGCAAGACCGCGACGTCATCTATCTCCCCTCGCTGGCCGCAGAGTTCCACCAGAGCCCTAAAGACGTGTACTCAGACTTCAAAGACCTGATTGGCCAGATCCTGATGGAGGCGCTCCTGATGTCCAGCCATTCGTGTGTCCACAACCCCTTCTCCAGCCTGACGGCCACTTCTCAGCCCATCGCCGCTGCCAAATCCCCAGACCACCGCCTGACGCTGGTGCCCCCCTCCAGCCAGGGCAGCAGTCCCATGGCCCCTTGCGCCGGATCCTTTGGAGCCAGCTCTCTTCTGGGAGCGTCTGGAGGCGCGACGTCGTGTGACGTGGCCAGCGACCGCTTCACCATCGAAGTGTGCAAAGAGACGGAGATGCTTAACTACCTCATCGAGCGCTTTGACAATGTTGGCATAGAGGAGCGGAAGGCACCCAAGATGTGCAGCCATCCCAGCATCAGCCAGCTTCTGAGCAACATCCGCTCCCAATGTATTTCCCACGCCACCCTGGTACTGCAAGGCTCCCTCACCCAGCCCAGGAGTCCTCTCCACGAGTCCCTGCTGGTCCCCTACATGCTGTGCCGGAACCTTCCGTACGGCTTCATCCAGGAGCTGGTGCGCTTGACCCACCAGGAGGAGGAGGTCTTCAGACAGATATTTATCCCCATCCTACATGGGCTGGCCCTGGCAGTGAAAGAATGCTCTTTTGACAGTGACAACTTCAAATTCCCCCTCATGATGACGTCGCTGCCTCTGTGGTGCCCCACCCCTCTGAGCCCGGGCGGAGGCAGAGAGCTCCAGAGACTGTCCTACATGGGGAACTTCTTCAGCCTGTCCGTGTTCGCCGACGATGACTACTTCTCCGGCCCGGCCATCACCATGGACAACACCAAGGTGGTCAGCCAGTCCCTTCAGCACTACCTGGAGTCGGCCCGGGGAGACCTGTTCAAGATCCTCCACAACATCTTGTTGAACGGAGAGACCCGGGAGTCGGCCCTCAACTACATGGCAGCTTTGGTCAAATCTAATGTGAAGAAGGCTCAGATGCAGACGGACGACAAGCTGGTGTCCACGGACGGCTTCATGCTGAACTTCCTGTGGGTACTGCAGCAGCTGAGCATGAAGATCAAGTTAGAGACGGTGGACCCCTTCTACATCTTCCACCCGCGCTGCCGCCTGGTGGTCAGCCCCGAGGAGACCCGCCTCAAGGCCACCATGGAGGAGCTCAAGAGCTGGCTGGCTGAGCTGCACGAAGACCCCACCAAGTTCTCGGAGCCCAAGTTCCCCACGGAGACCGTGGAGGAGCTGAAGAACAGTGAGAGCCAGTGGAAGGACTCTCCGCTGGCCAGTAGACACAGAGAGATGCTGAAGAGATGCAAAACACAGCTCAAGAAACTGGTGCGGGCCAAGGCCTGCGCTGACGCGGGTCTCCTGGACGAGAACCTTCTGCGTAGATGTCTGCAGTTCTACAGCACCGTCATCCAGCTCATCCTGCGCATGGTGGACCCTGCCTACCCCCACATGACCCTGCCACTGAACCCAGACATCCCCAAAAGCTTTGCTGCGCTGCCTGAGTTCTACATTGAAGACGTGGCCGAGTTCCTGCTCTTCGTCGTGCAGTATTCTCCCCAGGTGCTGTATGAGCCCTGCGTGCAGGACGTGGTCACCTTCCTGGTGGTGTTCATCTGCAGCCAGAACTACATCAGGAACCCCTACCTGATCGCCAAGCTGGTGGAGGTGCTGTTTGTCACCAATCCGGCGGTCCAGCCGCGCACCCAGCGCTTCTTCGAGATGATGGAGAACCACCCGCTCGCCATCAAGCAGCTGGTTCCCGCCCTCATGAAATTCTACACGGATGTGGAGCACACCGGTGCCACCAGCGAGTTCTATGACAAGTTCACCATCCGCTATCACATCAGCACCATCTTCAAGAGCCTCTGGCAGAACGTCGGACACCACGGCACCTTCCTGGAGGAGTTCAACCTGGAGTCCCTGAAGCGCATCCACGAGGTGCAGGAGGAGATGAAGAACAAGGAGCAGTGGGACCAGCTGCCCAGGGAGCAGCAGCAGACCCGGCAGTCCCAGCTGACCCAGGACGAGCGTGTGTCCCGGTCCTACCTGGCCCTGGCTACGGAGACGGTGGACATGTTCCACATCCTCACCAAGCAGGAGCTGGGCCCTCGTCTGGCGGCCATGCTCAACTTCAACCTGCAGCAGCTGTGCGGGCCCAAGTGCCGGGACCTGAAGGTGGAGAACCCCGAGAAGTACGGCTTCGAGCCCAAGAAGCTCCTGGACCAGCTCACCGACATCTACCTGCAGCTGGACTGTGCCCGCTTCGCCAAGGCCATCGCTGACGACCAGCGCTCCTACAGCCGGGAGCTCTTCGAGGAGGTCATCTCCAAGATGAAGAAGGCCGGCATCAAGTCCACCATCGCCATCGAGAAGTTCAAGCTGCTGTCCGAGAAGGTGGAGGAGATCGTCGCCAAGAACTCCCAGTCCGAGATGGACTACAGCGACGCTCCCGACGAGTTCAAAGACCCTCTGATGGACACCTTGATGACGGACCCCGTGATCCTGCCCTCTGGGAACATTATGGACCGTTCCATCATCCTGCGCCACCTCCTCAACTCCCCCACTGACCCCTTCAACCGACAGCCACTCACTGAGAGCATGCTGGAGTCAGTCCCCGAGCTGAAGGAGAGGATCCAGGCCTGGATGAGAGAGAAGCAGGGAGGCAGGCTGTGGTCGCCGCCGCCGCCGCCGCTCACCTATGGTCCTGCCGTTGGCGCACTGAAAATCTTCCAGACTCCGAAAGCCGCAGCCATGTCGGGGGCTTCTGTGAAGGTGGCCGTCCGAGTTCGGCCCTTCAACTCCAGGGAGACCAGCAAGGACTCCAAGTGTATCATTCATATGCAGGGCAACAATACCACAATCTTAAACCCTAAATTCCCAAAGGAACCGGCAAAGAACTTCAGCTTTGATTACTCTTACTGGTCACACACTACGACAGAGGACCCTAGTTTTGCGTCACAGAACCTGGTATACAATGACATTGGCAAGGAGATGCTTCAGCATGCCTTCGAGGGCTACAATGTGTGCATCTTCGCCTATGGCCAGACTGGATCTGGCAAGTCATACACCATGATGGGCAGACAGGAAGAGGGGCAGGAAGGAATCATTCCCATGCTCTGTGAAGACCTCTTTGAGAAGATCAATGAGCACAACAACGCGGGCGACCACTCCTACTCCGTAGAGGTCAGCTACATGGAGATCTACTGCGAGCGAGTGCGAGACTTGCTCAACCCCAAGAACAAAGGGAACCTGCGCGTGCGAGAGCACCCCCTGCTGGGACCCTACGTGGAGGACCTGTCCAAGCTGGCGGTCACCGCTTACACGGACATCGCTGACCTCATGGACGCCGGCAACAAGGCCAGGACGGTGGCGGCAACCAACATGAACGAGACCAGCAGCCGCTCGCACGCCGTCTTCACCATCGTGTTCACGCAGAAGAAGCACGACAACGAGACGGCGCTCTGCACGGAGAAGGTCAGTAAAATCAGCCTGGTGGATTTGGCCGGCAGTGAACGCGCCGACTCCACGGGAGCCACGGGCACCCGACTAAAGGAGGGCGCCAACATCAACAAATCTCTGACCACGTTAGGGAAGGTCATCTCCGCTTTGGCCGAGGTGAGCAAGAAGAAGAAGAAGAGCGACTTCATCCCGTACCGAGACTCCGTTCTCACCTGGCTGCTCCGGGAGAACCTGGGCGGGAACTCCAGGACGGCGATGGTGGCCGCCCTCAGCCCCGCAGACATCAACTACGACGAGACTCTCAGCACGCTACGCTACGCGGACCGGGCCAAGAACATCAAGTGCAACGCAGTGATCAACGAGGACCCCAACAACAAGCTGGTGCGGGACCTGAAGGACGAGGTGACCCGGCTGAAGGAGCTGCTCCGTGCCCAGGGCCTGGGGGACATCCTGGACAGTAAGTCCTGCAGGGCCCTACTAGGGACACTTCCCAACATGTACGGCAAGCCATAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225	Kinesin	Kinesin motor domain	Domain	Interproscan
PF04564	U-box	U-box domain	Domain	Interproscan
PF10408	Ufd2P_core	Ubiquitin elongating factor core	Family	Interproscan
PF16183	Kinesin_assoc	Kinesin-associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000463	Domain	Cytosolic fatty-acid binding	Interproscan
IPR001752	Domain	Kinesin motor domain	Interproscan
IPR003613	Domain	U-box domain	Interproscan
IPR012674	Homologous_superfamily	Calycin	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019474	Domain	Ubiquitin conjugation factor E4, core	Interproscan
IPR019821	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032405	Domain	Kinesin-associated	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR045132	Family	Ubiquitin conjugation factor E4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13931	UBIQUITINATION FACTOR E4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000151	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0034450	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0036503	Biological Process	ERAD pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-