Gene detail

Detailed information of KAG7269560.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7269560.1	UBX DOMAIN-CONTAINING PROTEIN 1	PIJE02000540.1	152030	159191	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7269560.1

ATGACTTCTCCCGTGTCTCCGGAGCAGATCCAGGGGGCGGTGCAGGCGGGACACTTCTCCGTGGCGGACGCTGCCGAGTGGCTCCTGCAGGGACCGAATGTGCGCCACAAGTTGATGAAGCGACCGTCGGAGCCGGCCGAGACGCCGTTCTCCGCCTTCAACCTTCCCAAGGGGTCACACGTGGCGTCAGCTGACGGCGGAGCAAGCTGGGAAGGCAAGTTTACCGTAGAGATTCATAGTCCTATCCACATCCTAAGCATTGAGCGTGAGCTGGTGCTGAAGCGCATCGCGGAGGACCGCAGGAGCCAGCAGGAGAAGACCAAGACCTCGCCGGCCTCGGCCGAGGAGTCCCAGACCGCTGAGACTCCCAAGACCACCGGGGCCCAGAAGCTGGGAGGGGGCCCCCAGACCAACGTGGACAACAACTGCATCCTGATGATCCGCCTGCCCTCGGGGGAGTCCATGCGGGAGCGTTTCCATGCCGACGCCCCCCTGCGGAGCGTGGTGGAGCACATATCGGAGCGGCACCCCTCCCTGCCCGCCTTCTCCCTCCTCCAGGGGTTCCCACGGAAACGCTTCGGGGAGGCGGAGCTCGCGTGCTCCCTGCGCTCGCTGGGTCTCATGCCCAACACCGCCCTCTGCCTCCAGACCACGCCCCCGGAGACGGCCCCCCGCGCCCCCCCACCGATAGGCACCGAGGAGAACCAGGAGTCCACAGCTGTGGCTCCTCCTCCTCCTGGGAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTGCCAGGGATGGAGCAGGAAGTCCCGCCCCCGGCGCTGCCCCTCCAGCTGTGGGAGGAGGCGGTGGGCTGTGCCGGCGTCCCTGGGGCCCCATCCCCTTTCCCGGGCCCTTCCCACTTCTGGGCTGAAATATTCCATCTTGTCCTGGTGGTGGTGGTTGTGTTGGGCAGGGCGGGGGAGGGCGCGGCGGAGAAGGCGGCCCCAGAGGATGCCGGGATGCGGGCGGGGCCGGGGCCGGGGGGTGGGGCCGCGGGCCTGGCTGCCGTGGAGCGGCTCCAGAGGGCGGGGCCGCAGGACGAGCAGCCGGCCCACCGGGGGCTCCCCTCGCCGCCCAAGAGAGCCTACCGAGCGCCTAGCGTCACCTCGCTGTGTAGCATGGCGACGCGCGCCACCGCACAGCTCATGGCCGCTCCCAGCATGCAGTACAGCAGCAGCCTTGCGTGTCTGACGCCGGAGCTCGTGGAGCTGCTGCTCGGCCACATGGCCCGCGAGCGGCTGCTGCGTCCACGCACCCTGGAGCTGTTCTTCGGGTGCCCGCTGCAGAAGTTTGTCCTCAGCAGCTACCCGTACTGCACCAACGACCTGCTGAGGCAGCTCCGCGCCTTCCCGGCCCTCAAGCACCTGAGCCTCGTCAACTCCCCGCTCATCACCGACTCTGGCTTGTCTGTGCTGTCCAGTCTGGTCAAACTCCAGCACCTCAACCTGTCGTCCTGTGGGAAGCTCACCGACTCCTGTCTGCAGTACATCACAGGCCTGAAGGCCCTGAGCTTCCTGTCCCTGGACCAGACCAAGGTGAGCGACGCGGGGATGCTGCCCTACCTGGGCTCGGCGCCCGCCAGCCTATCGCAGCTCAGCCTCAACCACACGGCCGTCACCGAGGCAACGCTGGCCGCGCTGCCTGCCTCCACGCCACACCTGCGCTTCCTGAGCATCAAGCAGACCAAGGTGAGCGACGTCTCTGCGCTGGCCGAGCTGCTGCACCTGCAGACACTGTACCTGGACGGGACGACGGTCTCCCTGGAGCCCCTGGCCCGACACCCCTCCCTGGCCGCCCTCAGTGTGGCGGGGGTTCTGGTCCAGGACCCCGACCACGCCCTGCACCTCATCTCAGGTCTGAGGCTGACCCAGCTCACCCTGCCCGGACGCTACGCCGTGACGGACCAGGGTCTGGCCTTCCTGTCCAGACTCACCCTGCTCACCGAGCTGGACCTCACCGACCACACCCAGGTCACGGACCAGGGTGTCAGCCAGCTGGCCACCATGACCAGCCTGAAGAAGCTGTCTCTTAGCAACACGGGGCTGACGGACAGCGGCCTGCCCCCCCTGCGGAGCCTCCGGGACCTGCAGGAGCTGTGCCTGGACCGCACCTCCGTCACCAGCAGGGGCGTGGCCGGGCTCATCACCTGCCTGCCCCGCCTCCAGGTGCTGGGTCTGGCCTGCACGCGGGTGGGCGACTCGGTGGTGCGGAGAGGTCTGATTGGCTGCAGCCAGCTGGTCAAACTCAACCTCAGCCGGACACGCATCACAGACCGTGGCCTGAGGTTCCTCAGACACGTGCATCTGGCGCAGGTGAACCTGGACGGCACCGGGGTGACGCCCGCCGGCGTCGCCAACCTCCTCACGCTGAGCCACATCGTCAGCGTGCGCGCCAGCAACGTCCGCGCCATCGCCCCCGACGACGTCTCCGATGACGACCAATCACAGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46340	UBX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031397	Biological Process	negative regulation of protein ubiquitination	Interproscan
GO:0032435	Biological Process	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:1903094	Biological Process	negative regulation of protein K48-linked deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-