Gene detail

Detailed information of KAG7266272.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7266272.1	FAS-ASSOCIATED PROTEIN	PIJE02000833.1	144094	210911	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7266272.1

ATGGCCTCCGACAGCGGCGACAGCAACATGGACCGAGAGATGATTCTGGCTGACTTTCAGGCTTGCACTGGAATCGACATTGCGGAGGCAATCGCTCTACTGGAGCTCAACAACTGGGATTTAGTGGCAGCAATCAATGGAGTGATACCACAGGAGAATGGGATCTTACAAAGTAACTTTGCCGGCGAGGCGAGTCAAGCCAACCTATACGGACCCCTTAGCCAATCAGAGGCAGCCGAGGCGGCAGTGGCGGTGGCAGCGGCGGCAGGCCCAATCCACAATCCCCCATCAACGTCTTCGTCCGCCTCTCCTCCTCCTCCTCCTCCGTCCTCGTCCTCGTCCTCCTCAGCCTCGGCCTCCGCGTTCTGCCCCATCCTCCCATCCTCCCGCCACATCGTGGAGCGGCAGCCGCGGATGCTCCACTTTCGTGTGGAGTACCGGCAACGCACCACAGAGGTGGTGCTGGAGGAAGCTAGCACAGTTGGGGAAATCAAACAGATCCTCGCGACAGAGCTCGGGGTTCCAGTGTCCAAAATGCAGCTGAAGGGATGGAAAAGTGGAGATGTACCGGACAGTACGGTGCTGAGAAGTTTACACCTGCCCAAGAACAACAGCCTCTATGTCCTGACACCAGATATCGCGCCCACTGCCAGCACCAGCCAAAACAGTGCTCTCCCAGAGTCATTAAACCAGAACTATCTACTGGTCATCAGTCATCGCGAGACCCACAAGGAATACAACCTCAACTTCCCCGGCTCCAGAACTATACAGGAGGTGAAAAGGAACGTTTCAGACTTGACCAACATCCCCGTGCGGCACCAACAGTGGGAAGGTTGGCCAGCATCAGCATCTGATGACTCTATGACACTCGCAAATTCTGGGATAAGCTATCCCTGCCATCACCTCAGTGTGTGTCGAAGATCTTCACCAGCCAATGCCCAGGAGCCTACAGAAGAGTGCGCAGATGTCCACATGATGAGCGACAGTGAGGGGGATGACTTTGAGGATGCGTCAGAGTTTGGCGTGGACGATTCTGAGATGTTTGGAATGGGCTCCTCAAGCAGTCGGAAATCACCTTTGATGCCAGAGAACAGTGAGAACGAGGGTGATGCCTTATTGCACTTTACTGCCGAATTTTCTACCAGATATGGAGAAGTACATCCCATGTTCTTCATCGACTCATTGGAAGCAGCATCTCAAGAGGCCTTCTACGGCAAAGCCAGAGAAAGAAAGCTGTTGGCCATCTACCTCCACAACGACGAGAGTGTCCTTAGCAACGTCTTCTGCTCCCAGATGATGTGTGCCGACTCCATCGTCTCTTACCTGAGCCAGAACTTCATAACGTGGGCCTGGGACGTCACTAAAGAAGCTAACAAAGCCAGACTACTCACCATGTGCACGCGGCACTTTGGCAGCGTGGTGACCCAGACCATACGGACCTACAAGACCGACCAGTTCCCCCTGCTCCTCATCGTCATGGGCAAGCGCACGTCCAACGAAGTGCTAAACGTCATTCAAGGCAACACGACGGTGGATGAGCTGATGATGAGGCTAATGGGAGCCGTGGAGATCTTCACAGCGCAACAGCAGGAGGACATCAAGGACGAGGACGAGCGCGAGGCGAGGGAGATGGTGAAGAGGGAACAGGACGAGGCCTACCGCTTGTCCTTAGAGGCTGACCGCAAGAAGAGGGAAGCGCAGGAGAAGGAGGAGGCGGAGCAGGTGCGCCAGGAGCAAATGAGGAAGGAGCAGGAGGACGAGAAGGAGGCCATCCGCCTGTCACTGGAGCAGGCCCTGCCCCCGGAGCCCGCCCTGGGACAAGGGAGAGCCAATCAGCAAGCTGCGCATCCGCACGCCCAACGGCGAGTTCCTCGAGAGGCGTTCCTCTGCAGCTGTAAGCTCCAGGTGCTCTTCGACTTCGTGGCGTCCAAGGGAATACCCTTCGAGGAGTTCAAGCTGCTCACCACCTTCCCTCGTAAAAATATCACCCAGTTGGATCCAGGGTCCACCTTGTTGGATGCGAAGCTGTTCCCCCAGGAGACACTGTTTCTGGAGGCCAGAGAATAG

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan
PF21021	FAF1	Fas-associated factor 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR001012	Domain	UBX domain	Interproscan
IPR006577	Domain	UAS	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR044541	Domain	FAF1, UBA-like domain	Interproscan
IPR049483	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0010942	Biological Process	obsolete positive regulation of cell death	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-