Gene detail

Detailed information of KAG7265183.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7265183.1	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	PIJE02000948.1	20210	28945	+

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7265183.1

ATGGAGGTGGCCTATGTGTGTGAGTGGGAGAGGAGACCCCAGAGCACACACTGTCCCTCGGTTCCTCTGGTCTGCTCCTGGTCCTGCAGGAACCTGGTGGCCTTCACCAGCGACCTCAAGAACCAGGAAGATGAGAAAGATGTTAGCCAAATGATCCACATCATAGACACTGACCATCCATGGGACGTCTACTCGATAAACTCTGGGCATGCTGAGGTCATTTCCTGTCTGGAGTGGGACCAATCAGGCTCCAGGCTGTTGTCTGCGGACGGTGACGGGAACATCAAGTGTTGGACGATGGCGGAGCACCTGGTGAACTCGTGGGAGAGCAACATGGGCAGCTCCTTGGCCGGGGAGCCCATTGTCGCCCTCTCCTGGCTGCACAACGGAGTGAAACTGGCTCTCCACGTGGAGATGTCCGGTTCCACCAACTTTGGGGAGAAGTTCTCGCGCGTCAAGTTCTCCCCGTCTCTGACGTTGTTCGGGGGAAAGCCGATGGAGGGCTGGCTGGCCGTGAGCATCAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAACGGCACGCTGCTCACCTCCAGCGAGAGCCTCTGTCGCCTGCGGGGCCGCGTGGCGCTGGCCGACATCGCCTTCACCGGCGGCGGGAACATTGTGGTGGCCGCCACCGACGGCTGCAGCACCTCCCCAGTCCAGTTCTACAAGGTGGTGGTTACCATGGTGAATGAGAAATGCCGGATCGACACAGAGCTGCTACCGTCGCTGTTCATGCGCTTGGGGGAGAAACAGCCGACCATCCTGAAGTGGAGGATCCTGTCGGCCACCAACGACCTGGAGCGGGTGTCGGCTGTGGCACTGCCCAAGCTGCCCATCTCCATCTCCAACACGGACCTGAAGGTTGCCTCGGACACCAAGTTCTGCCCCGGACTTGGGCTAGCCTTGTCCTTCCACGACGGCAGCCTGCAGATCCTGCACCGGCTGTCCCTTCACACCATGGGCGTGTTCTACGGGCCCGGCGGCTCCGCAGCGGCGGGGCGGCCTGGTGAGGACGCGGCTGCCAAGCGCCAGCGAACCGGCGGCCCTGCGGTGCACTTCAAGGCCCTGCAATTCTCCTGGACCTCGCTGGCCCTGGCCGGCGTGGACAACCAGGGCAAGCTGCTGGACATGAACACCACACTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACGGGCTACGACTGGTGGGACGTCCTGCTGCACGTGCAGCCGGCCATGGTGCACAGCCTGCTGTCGTCGGCGACGGCGGCGCGCGCCTGCGACTTCCACGCCAAGCTGCTTCTGATGGCCATCAGCTCCACGTTCAAGTCCCTGCTGAGACCGCACACGCTGCACAGCCCAGACAAGAATATTGATAAGGTGATGATCAACCTGAAGACGGAGGAGTTTGTGTTGGACGGACCCCCTCTTCAGTCTCTCCAGCAACTCATCCAGTGGGTTGGAGACTTTGTCCTCTACCTGTTGGCCAACCTGCCCAACCAGGCAAGCTTCGGGTTCTTGCGGGACGGATCTTCGCTGGGGATGCTGAGGGAGATGATGGTGATGATCAGGATCTGGGGGCTGCTGAAGCCTGGGTGTCTTCCCATCTACACGGCCACGTCTGACAGCCAGGACAGCATGGATGATGCCCCTCCCCAGGAGCCAGACGAGGCCCTGGTGGACGAGTGCTGCCTGCTGCCCAGCCAGCTCCTAGTCCCCACCATGGACTGGCTGCCCGTGAACGACGGAGTCATCGTCAGACTGCAGGGCAAGCTGCCGCTGCGCCTGCAGGGCCAGGGGGTTCAGTGGATGGATAACCTGCGCTGTCTTCACCTGGGCGTCTGCCCTACGGAGGACAGCAAAGCCTGCACCAGAAGATTGAGAGGAGAGGAGAGGGAGGAGGAGGAAGAGTCAGGAGAGCCAGAGAGGAGAGTGAGGAGGAGGAAGGAGGCAGAAGAGACGAGGAGAGGAGGAGGAGAGAAGGAGAGGAGAGCAAGGGAGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11635	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan
PF20718	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR011041	Homologous_superfamily	Soluble quinoprotein glucose/sorbosone dehydrogenase	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR021665	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan
IPR048616	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-