| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| KAG7253474.1 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER | PIJE02005979.1 | 5329 | 15632 | + |
| CDS | |||||
| KAG7253474.1 | |||||
| Transcript |
| - |
| Protein |
| KAG7253474.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00176 | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF00538 | Linker_histone | linker histone H1 and H5 family | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF21325 | SHPRH_helical-1st | E3 ubiquitin-protein ligase SHPRH, first helical domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000330 | Domain | SNF2, N-terminal | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR005818 | Domain | Linker histone H1/H5, domain H15 | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR019786 | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR038718 | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR048686 | Domain | E3 ubiquitin-protein ligase SHPRH, first helical domain | Interproscan |
| IPR052583 | Family | ATP-dependent Helicase/E3 Ubiquitin Ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45865 | E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000209 | Biological Process | protein polyubiquitination | Interproscan |
| GO:0000786 | Cellular Component | nucleosome | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006334 | Biological Process | nucleosome assembly | Interproscan |
| GO:0006974 | Biological Process | DNA damage response | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0140658 | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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