Gene detail

Detailed information of KAG7250591.1 in Coryphaenoides rupestris Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
KAG7250591.1	PCD6 INTERACTING PROTEIN-RELATED	PIJE02012249.1	142	5485	-

Gene Structure

More details in Jbrowse Sequence

CDS

KAG7250591.1

ATGGACTCCCTGGGCTTGGAGCTGGAGTCTGTGGACAACCTGGAGCTGTACAGCCACCTGCCGCCCGTCCTCATGGAGAAGTGTGCCGCGCTCAGCGTCCGGCCAGACACCGTCAAAAGCCTGGTGCAGTCCATGCAGGTCTTGTCGGGGGTGTTCACCGACGTGGAGGCCTCTCTCCGGGACATCCGGGGCGTCCTGGATGAGGACGAGGCCGGCCTGCGGGCCCTGCAGGAGGCCGGGGGGGCCGCAGAGGTGCACCCCGCCGCCCAGGCCCAGGCACTAGCCGAGATCCGGCGGGACCTGGACAAGTACGCGGAGGCACACGAGAAGGCCAGCTTCACCAACACGGAGCTGCACCGCGCCATGAACCTCCACATCAGCAACCTGCGGCTGCTGGGGGGGCCCCTGGACAGCCTGCGGGACGCCCTGCCCCGGCCCCAGCTCAACGAGGAGGAGGTGGCGGGGCTGCAGTGTATGAAGCGTATCCTGGGGAAGGTGCAGGAGATGCGGGACCAGAGGGGCTCCCTGGAGAAACAGCTGCGTGACCTCATCCAGCAAGACGACATCACTTCCTCCCTCCGCGTGTTCGAGGAGCAGCTGAAGAAGTACGAGCAAGTGAAGGTGTACATCGAGCAGAACCTGGCGGCCCAGGACAACATCCTGAAGGCGCTGACGGAGGCCAACGTGCAGTACGCCACGGTCCGCAAGGGCCTGGCGCACACGGAGCAGCAGTGGACCGCCACGGTGCAGACGCTGGTGGCCTCCTATGAGGCCTACGAGGACCTGATGAAGAAGTCCCAGGAGGGCAAGGAGTTCTACGACGACCTGGAGGCCAAGGCCTCGCGGGAGGCCCTGAAGAAGCCTCCGGCCCGGCCCACCGCGGCCAAACCCACCCTGAAAGCCAAAACCTCAGACAGTGACTCTGCCTGCTCCAGCCTGGACGACCCGGAGCTGGCCCAGCTCAACGCAGCCATCCTGGCCTTGGGGGGCGACCTGCCCGAGGAGCTGCGCAGCCTGCCCCCCGACATCCCGTCCCTGCCCATGTCTGCCGGCCCGGAGGCCTACCTGCCCCCCGCCGCCGCCGGCAGCACCTCCCTGCCCTGGCCCGGCGCCATGGCCATGGGTCCCCACGGGTCGCCCCGCTTCCCCGCCAATCTGCCCCCGCCGGAACTCCTGGCCCGCATCGCTCAGTACCCCACCCCGGGAGGACCCCATCCCCAGATGCAGGCCCAGGGCCCGCCTCAGGCGCCTCCCCAGGCCGCGGTGTCCGGGTACGGCCCCCCGCCTCCGCAGGTCTCCCACGCCGGCCCTGTGGCCCCCGCCCGGCCCTCCACCACCACCGTGGACAGCATTCAGGCGCCCATCCCCAGCTACGCCCCCAAGCAGCACTACCCCCGCCCCCCGGGAGCCCCCAGTGGCTACCCGGCTCCGCCCCACATGGGGGCTTATCCTCAGTTTGTGCCCCATCCAGGGATGCCCATGCAAGGACCGGTCCCTGGACATCCACCCCAGCAAGGCCAGGCCTCCCTCCCCAGTACCCACAGCTGTTCCCTGGGCAGCCGCATCCACAAGCGGGCTACATGCCCCACCCTCAGCACCCACCCCAGCCCCAGCATGGAGCCCAAATGCCCCAAGGCTACCAGCCCGCACAGGGCCCCCGCCGGCTGCATGCCAGCCTTACATCCAGCCGGCAACCAGCCTTACATCCAGTCTGGCAACCAGCCTTACATCCAGCCTGGCAACCAGCACATCCCCCCCGGGTTGCCCCCGCATCACATGATGCCACAGCAACCAAAGCAACTCCCGGGGCATCCCGGAGCGCCGCAGCAGCAGATGGTTCCTCACCCCCATCAGCAGATGCACATGCCCCCCGGTGCCAGGCCTCAGATGACCCCCGCCAGCCACCCCATCGCTCCGGGAACACAGAACTACATGCCTTCGGCCAGCCAGCCCATGCCTGCTGCGATGCACCAGCAGATGCCCGGCGGCCCCATGCCTCCTACCTCGCTGCCCATGCAGCAGCAGCAGCAGCCACCGCTCCCCGGTCAGCTGCCCATGCCACACATGCCCCAGCAGCCCATGCGGATGCCTGGCCAGCCCCAGGGCCAGCCGCCGCACATGGGGCCTGTGTGCTACCCGGGGGGGCCTCCCATGATGCCCCCGCAGCAGCCTCTGGTTCCGCAGCAGCCTCTTCACCCACAGCACCCCCAGGCCCACCCCACTCCCACCATCTATCCTCCCCCCAGTGCACCTCCAGGCGCCCCCCAGCCGGCCGGTATGATGGCCCCCCCGCACGGTGCCCCGGTCCCCCCTGCTCAGCATATGATCCAGCCCTCGCCAGGAGGTCTACCGGCAGCCCTCGCCACCAATGGCATCCCCCCCCTTGCCCCTTCGCCCTCTCCCTCCCCGTCGCCTTCCCCGGCCCCCTCTTCTCTGGGACTGACCCCCCAGCAGAGACCCTCCCCGGCCCCGACCCCCGGAGGTGCGGTACCCCCTCCCTTGCCCTCGCCGTCGCGGCAGAACTCCAACACTGATGACCTTCTCTCCTCCAGCCCAGAGAGCCAGCCCGGGGGTCCCAAGGCCCCCACCAACGTCCTGCAGCCCACCAAAGCGGACCCCCAGGACGGGGAGCGCCGCAAGAAGAGCGCCCAGTGCGTCACCCTGATCCAGGGGGACCCCTACCAGGCCCCCGAGCGCATCGCCCACCTCAACGGCGAGCTGGACCGCTACCGGGCCCAGGTGGACGCCCTGGAGCAGCCCTCGGAGAGTGAGGGCGGGTTGTCGGTGCTGGACGCCCGCTGGAAGGAGCTCCAGGACGGGCAGGAGAAGGACGCGCGGCAGCTGAGCATCGCTATCGCCCGCTGCTACACCATGAAGAACCGCAACCAGGACATCATGCCCTACGACGTCAACCGCGTGGTGCTGCGCTCGGGCAAGGACGACTACATCAACGCCAGCTATGTGGAGGAGCTGTCGGCCTACTGCCCACGCCTCATCGCCACGCAGGCCCCGCTCAGCGGCACGGCGGCAGACTTCTGGCTCATGGTCTACGAGCAGAAGGTGTCGCTGGTGGTCATGCTGGGCAAGGTCCTGCGCTACTTCCCGACGGTGCGTGGCCAGCAGGTCGCCCAGGGACCCATCACGCTCACCCTGACCACGCAGAAGGCCACGCCCACCCACGTGGAGCGCATGATCAGCCTGCAGTACCGCGAGCAGAGCCTGAAGCGCACCGTGGTGCACCTGCAGTACACCTCCTGGCCCGAGCTGTGA

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF13949	ALIX_LYPXL_bnd	ALIX V-shaped domain binding to HIV	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR016103	Domain	ProQ/FinO domain	Interproscan
IPR025304	Domain	ALIX V-shaped domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR045251	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23030	PCD6 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0045022	Biological Process	early endosome to late endosome transport	Interproscan
GO:0071985	Biological Process	multivesicular body sorting pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-