Detailed information of Hgig_25265 in Hirondellea gigas Gene info
Gene IDAnnotationChromosomeStartEndStrand
Hgig_25265SUPPRESSOR OF TY 5Chromosome284279224342929511-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00467KOWKOW motifFamilyInterproscan
PF03439Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF11942Spt5_NSpt5 transcription elongation factor, acidic N-terminalDomainInterproscan
PF12815CTDSpt5 C-terminal nonapeptide repeat binding Spt4RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR005100DomainNGN domainInterproscan
IPR005824DomainKOWInterproscan
IPR006645DomainNusG-like, N-terminalInterproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR017071FamilyTranscription elongation factor Spt5, eukaryoteInterproscan
IPR022581DomainSpt5 transcription elongation factor, N-terminalInterproscan
IPR024945DomainSpt5 C-terminal domainInterproscan
IPR036735Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR039385DomainNGN domain, eukaryoticInterproscan
IPR039659FamilyTranscription elongation factor SPT5Interproscan
IPR041973DomainSpt5, KOW domain repeat 1Interproscan
IPR041975DomainSpt5, KOW domain repeat 2Interproscan
IPR041976DomainSpt5, KOW domain repeat 3Interproscan
IPR041977DomainSpt5, KOW domain repeat 4Interproscan
IPR041978DomainSpt5, KOW domain repeat 5Interproscan
IPR041980DomainSpt5, KOW domain repeat 6Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR11125SUPPRESSOR OF TY 5Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006354Biological ProcessDNA-templated transcription elongationInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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