Gene detail

Detailed information of Hgig_24971 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_24971	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Chromosome27	257184198	257242593	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_24971

ATGCAATATGGTTTCCGCCGTCTCTTATCCACCCAAGACGCCCTCGTAAGAGTAACTACGGACATTGCTGGTGCATTGTCACGCAAAGAACACACAATATGCGTGTTCTTTGATATGGAGAAAGCCTATGATACCACCTGGCGATATGGCATTCTCAAGGAACTTTATCGCATTGGGTTGCGTGGCCTATTACCTTTATATATTCAAAGCTTTCTCTCTACTAGATATTTCCAAACCCAAATCTCAAATGACCGCTCACGCATTCATAAGCAGCACGAAGGCGTACCACAGGGAAGCGTCCTTTCGTGCACGCTCTTTGCTCTTGCCATCAACCAGATAGGCACGTCCCTTCCCCCTGCCGTAAATGGATCTCTGTACGTGGACGATTTCATGGTCTATGCATCTGGCCCTGAGCTTCAACCTCTGCAAAGGGTGATGCAAAGCGCAGTGAACCAGGTCTGTCGCTGGACCAACCAACGTGGTTTTAAAATATCCACCACAAAAACTGTTGGCCTTCACTTCCGTCGCTCTCGAGAGCTAACTGAACCAGATATCCGTATTAGTAATCAAATGGTTCCTTTTCGCGAGACCGCTACCTATCTTGGAATGATCTTTGACCAGCGTCTACAGTGGAAGCAACATATTAAGTCTCTAAAGACGGCATGTATCCGCCGTCTTTCCCTTCTGCGCTGTCTGTCTCATAAAGACTGGGGTGCGGATCGGATTGTAATGCTCCGACTGTACCGAGCCTGCATCCTCTCCAAGATGGACTATGGCTCTATTATTTACGCTTCAGCTAAGGATTCTATTCTGAGCTCTCTAGAACCCGTGCAAAATGAGGCAATTCGAATAGCCACGGGGGCCTTCAGGTCGTCCCCGGTTCTTAGCCTACAGGCGGAAGCTGGTGTGGCACCTCTTGCCATCAGACGACAACAGCTGACTCTACAATTTTACACTCATATAAAGGCACTACCGACTTCACTCACTTGCATCTCGCTACATCGATCTCCCCTCAACCAAGCACCTACTGGTTCGTTTCCCAATAGAGTGCACGAGTCCCTGACCCAACTCAGGCTTCCTCCATTTATGGTCGCGCCAGTTCGACATTATGGCACACCCTCTTGGCGCCTTTCTCCTTCGCTTCTATGCCCTGGATTCCGCCATAACCCAAAATCAGTCTCTGCCCCGACAGACCTACGAGTTCTTTTTCTGGACCACCTTGCAAGAGCACATGTACAACAAGAACATATTTATACCGATGGATCAAAGGATGGCCGCTCAGTAGGCTGTGCCGCCGTCTATAATGACCAAATTTTAAAGCAAACGCTTCCCGGTGAAGCGTCAATATTCACCGCAGAGCTCTTAGCCATCCACGATGCACTAACTTTAGCCGAGTCTTCCCCCTCCAACAACATCCTTGTGCTTGCAGACTCTCTTAGTGCACTGCAAGCCATTAACAAATATAACTACCTCCACCCAATGGTTATGGAAATTCAACGCTGGCTGATCCGCTTGGCTGACAGACACAAGACTGTCCAGCTGTGCTGGGTACCAGGTCACTGCAACGTGCCAGGTAACGATCGCGCTGATCTGGAGGCACGCCAAGCGGCAACTATTGATGTAAATGAACCAGGTATCCGCATACCATATAGAGACTATTACTCAGTAATAAAGGATTCTATGCGCTCATGCTGGGCAGAAAGGTACCTGGTTGGCAAGCAAGTAGGAGACGAGTCGTCGGTGGAGGCCTACATCCGTGCGCTGTACATGGGATGTCGGTGCATCGAGTTGGACACGTGGCCCGAGAAGGACGGCAAGATCTACATTTACCACGGTTTCGCCTTAACTACTAAAATACTCTTGGATGACGTGCTCGTTGCTATTAGAGATCACGCCTTTGTTACCTCTCCGTACCCGCTGATCCTGTCAATAGAGGACCACTGCACACTGCCGCACCAGCGAGACATGGCCCGACTTCTGCGTGAGACGTTCGGTACGTCTCTGCTCACCGAACCGATCCAGGCCGGCGAGACCCTCGCCCCGTCTCCTGAAGCCCTCAAGTACAAGATCATCATCAAGCACAAGAAACTCAACGATGGCGCCAGTGAAGAAACTACTGCTGGAGCCGCTGGCAGTAATTCTGCTGCTGGCAGCGGCGGGGTGATCAGAAGAGCTCTGTTGTATAGGCGGCACCCCGTGTTACAAAACCAGTGGCTGAAGCACTACTTTATGCTCACACCGACGCGGCTCTACTACACGCACGCCTGCGAGAACGATGAAGACACCTCTGCGGGTGCTGATGACGGAGGCGCTGCCGGAGGCCAGGTCAACTTGCCACCTGAGAAGCGTCATCAGAGTGAGCCGTGGTATCACGGTCAGTCCACCGTGACCAGGACCATGGCAGAGGAGCTGCTGAACCAGCACGCAGCCCTTGGAGACGCCACATTCCTCGTCAGGAGGAGCGAGAACTTCGTCGGGGACTTCACGCTCTCACTCTGGTTCCGAGGCAATTCATACCACTGTCGCATTCACAGTCATCAGGAGTCAGACAGAACCCGCTACTACATTAAGGAGAACAGCGTAATATTCGATACGCTCTATGAACTCATACAACACTACAGAACAAATCCTATTCATTCGCAGAGCATCGTAGCAACGTTGGGTGCTGCAGTGCCACAGCCTGATAGCCACATGAGAATGAGCTGGTACCATGCAGATCTGGACAGGCGGAAGGCCGAGCTCTGTCTTCATCGCCTCAGCCGCGATCAAGACGGTGTCTTCCTGGTCAGACCGAGCTCCAAACACACCGGACAGTTCGCCGTTTCCTTCAGCACCGGCCATCAGATCATGCACTGCCGAGTGCTGCGGGAGGACGGACTGTTCGAGTTGGGTAGCGCCGTGTTCGAGACACTGGGACAACTTGTTGACTACTACGGCGCCAATCCTCTCTTCAGGAACACCAAACTGCGCTACCCGGTCTCTCCTGCAGTGCTGCAGTCCGTCTTCGCTCAGTTGCGAGTGAAAGCGAAGCAGAAGTACAGCGCTAAGCAAGCAGACGAGCTAACGTTCCCGAAGCACGCCATCATTCACAACGTGAACCAGGTCTTCGATGAGTGGTGGAAAGGTGACTACGGAGCCAGGAGACAGCACCTCTTCCCAGCCAACTACGTCGAGGTGTTGCCTCCTGATGCTGCTGATGACAGGGCAGACGAGCAGCTGCTCGGAACACTGCAGCAAGGCTCGCTGGACCTGCTCGGCTGTACTCCTAAACTGACACCAACACCCAGCAATAGTGGTCCTGTGCAAGCCATTATCAAGCTTGTGTCGGGACTGGCGGTGTTGGAGGTCGGGTTCTCCACGGAGTCTGAGGCGACAGACTGGCTCAAGGACATCAAAGCGATGGCTGCCAGAGACGAACCTTTTAGTCAGGTGGGTGGGATCTCTTCTGCTTTGGCACTCCTCGCTGTGATCACCCGGAGGAGGTCGTGTGTTGAGTGA

Transcript

Hgig_24971

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00388	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR000909	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR001192	Family	Phosphoinositide phospholipase C family	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR017946	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004435	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0010634	Biological Process	positive regulation of epithelial cell migration	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0048015	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209	Biological Process	release of sequestered calcium ion into cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-