Gene detail

Detailed information of Hgig_23024 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_23024	LIM/HOMEOBOX PROTEIN LHX	Chromosome25	125838002	126312968	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_23024

ATGATACTGTACGGCACCACCACCCTGACGCCCCTGCCTACAAACTCATCCTCCAGCAGCAGTAGTTCCTCTTCTGCAGCGCTATCATCGTCCTCGTGTTCCCCACACTCCCCCGTCATCCCCATGGTGGGGGTGGCCGACATCTTCGTGGGGGAGAGTAAAGACATCAACACTGCCCTGCTGCCGGCCAGTCTCCACCCTTTACTAATATCCACCATCCCTAAGTGCGCGGGCTGCACCGAGGCAATACTGGACCGGTTTATACTGAAGGTCCTCGAGAGGACCTGGCACGCGCGGTGCCTCAAATGCAGCGACTGCTCGGCACAACTTACAGACAAATGCTTCTACAGAAACCAACAGGTCTTCTGCAAGGAGGACTTCTTCAGGAGGTTCGGCACGAAGTGCGCGGGTTGCGAGCAAGGTATCCCCCCCACCCAAGTGGTAAGGAGGGCCCAGGACAACGTCTACCACCTACACTGTTTTGCCTGCATCATCTGTCAGAGGCAGCTCAATACAGGCGACGAATTTTACCTCATGGAGGACAACAAACTCGTCTGCAAGAACGATTACGAGCAAGCCAAGCAGCGCGACGGCGACGGGACAAACAAGCGCCCGCGTACCACCATCTCTGCGCGCCAGCTCGAGCAACTCAAGCAGGCCTACAAAGACAGTCCGAAGCCGGCCAGACATGTTAGGGAGCAACTATCACAGACTTTGGGACTTGACATGCGGGTAGTGCAAGTCTGGTTCCAAAACAGGCGGGCGAAGGAGAAGAGGCTGAAGAAGGACGCGGGCAGGTCCCGGTGGGGGCAATACTTCAGGAGCATGAAGTCCGGTGGCGGCACCAGGGGGAGTAAAGACAGGGGCAGCCGCGAACACGACGACAAGGGGGACTCAGAGGTCGACCTTGACGCACACGACGATATGCTGCTGGACATGAGCGACGGATACCGGACGCCAGGACCCCCATCCATGGCAGATATGGAACCCGGGCAGACCGCCATGAGTCCCCACCTCACCCATCATCCACAGCACCCGCCCCCACCACACCCGCAGCACCCCTTCATGCACGGATCAGCTGAGATGGTCGTCGCTGAACTTTTTCCAGTTTTACATAGAGCAGCGACCCCTCCTTACCTTGGTGGAGGAGGGACACACTCCCCCGGAGCTCCCCCCACTGGACCACCACCGCATCCCCTACTATTCGCTTCTTTTGCTGACCACCTGAACCCCTACCAGAACCCCATGAACCCCATAGAGCTGGCTGGAGGTGTAGATGGTGTGCACATCACCATGTCACGAGAGGGAAGGCCCAGTGGTGAGGCTTATGTAGAGCTTGCCGATCCAGAGGACCTTCCAGAAGCAGAAAAGAAGCACAACCAGCACATCGGTCGCAGATATGTTGAAGTGTTCCGAGCTCGTCAAAACGAGATGGACAGGGCCATTAAGTGTAGTTCTGGAGATGACAATGAAGATGAATGCTGTGTGCGACTTCGTGGTCTGCCGTTTGGTTGCTCTAAAGAAGAGATTCTACAATTCTTTGATGGGTACGAGATAGTTCCTAACGGGATAGCACTACCAACGGACTACCAGGGGCGGCACACTGGGGAGGCTTATGTTCAGTTTGTCGATAAAGAAACTGCTGAAAGATCACAAGACAAACACAAGGAGAAGATAGCGCACAGGTGGGGGTCACGCGAGGGACATTATGATGGGCGGGAGTTTCTCGCAAAATGGGCTGGTACATCGCACATGGTGGGCGGGAGTTCTCGCGCAAGGTCTAGTGTTGTGGGATGGAAATTAATATCATTATCCAAAAAAAATGGCTACACTTGTAAGTTTTTGTACATAGAGATCTTCAAGAGCAACATGTCAGAAGTTCGTGCAGCTATGCAAAACCGCTCCCGTGGTGGAGGTGGCGGCGGTGGTGGTGGAGGCCCATATGGAGGGCCTATGGGAGGCTTTAACAACCGCCCGTCTCCCTACGACTCCAGAGACAGATATGGTGGACCAAACAGATACAATGGCATGGGAAGCCGTGGACGTTTTGATGACTATGATAACTACGGAGGCGGTGGTGGTGGCGGCGGCAACAATAACTACAGTGACAGCTGGGGCGGCGGCGGTGGTGGTGGCGGAGGCGGTCGCAGGGTTGGGGGCTTAGGAGGAGGCATGAAGCCGCGTGGTGGTAGAGACGATGGTGGCTTCTGTGTGCACATGCGCGGCCTGCCATTCAAAGCTTCAGAAATGGACATTGCTGACTTCTTCAGGCCACTGAACCCCGTCAATATCTGCCTCGTGAAGGATAACACTGGCAGACCGTCCGGCGAAGCAGACATCGAATTCGCCTGTCATGAGGATGCTGTCAGGGCCATGAGCAGGGACAAGGCCAACATGCAGCACCGCTACATCGAGCTTTTCCTGAATTCTTCACCTGGTGGTGGAATGGGGGGCCGCTCTGGTGGGTTTGGTGGTGGCGGCGGCGGTTACAGAGACGGACCCCGCATGGGCGGAGGCGGCAGATATAGTGGTGGAGGCGGC

Transcript

Hgig_23024

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR049594	Domain	LIM/homeobox protein Lhx3/4-like, LIM domain 2	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-