Gene detail

Detailed information of Hgig_16035 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_16035	TRANSPORTIN 3 AND IMPORTIN 13	Chromosome16	20108879	20220532	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_16035

ATGAAAGCAGTAGTCGTGAAAGAGCAAGACGATGAAGCATATGCAGTTTATCAACAAGAATTTAGGAGACTGGATAGAGAACGTTACGAACAATATAATAAGATCTACACAGACGGCTCAAAAATGGAGACGGGAGTTGGCGCTGCTGCGGTGTGTGGAGAGCAGGCGACGAGAGCCTGGCTACTGCAAGAAGCATCTATCATGAGCGCTGAATTACACGCTATATACTTAGCAATGAAAATGATAATAGATTCCACAGAACAGAGGCATGTAATCTACTCAGACTCGTACTCGTCGCTTCTCCAACTAAAAGAAGTTAACTACAAACATCCAGTATGCCTAAAGTTCCAACACGATATCGATATGTTGATGAGCAGCGGTGAAACAATAGAATTTTGTTGGGTGTCAGGACACGCTGGTGTCGAAGGCAACCAGAGAGCAGACATTGCTGATAAATCAGCAGTGGGATTGGTTGCAATGGAAGTCAGCACAAAGGAAGTAGAAGATGCAGTAATCCAGTTCTACAACAATCCAAACAGCAAGAAAGACATCCACACATGGCTCACTCAAGTGCAGCACTCAGCTCAGGCCTGGAATTTTGCCTTCCAGTTACTCGATCCTACAAAGACTGGGGAGGTGCAGTTTTTTGGAGGTAACACCCTATACATTAAAGTCTCCCGCTACTGGCATGAGGTGCCCAAGGAGGAATATGAAAGCCTTAAGAAGAGAATATTACATCTAATAGCTCAGTTTGCTAACAGTAAACCTATTGCTGGAAGATTGCTTAAAACATTAGCAGCATTTATACTGAACACTCTGTCAAATGAGTGGCCCACAGCAATAGAGGACCTGGTGACTCTGTTTAATCCTGACACTGTAACTGGCATCCAACCTGGCACGGCCCTCGACCTCCTCTTCACCGTCCTCATGATCATACCTGATGAGCTGGAGAATTGTCAAGAGACGATGGGCATTGCTCAGCCAACTAGGAACACTGTTCGTTCGCTGCTGAGAGAGAACTCCAAAGGAGTGTTGACGCTGATGCACCAAGTGATGCAAGCAGCACAGGTCAGCAACGTAACGAAAGAGATCGTGGTGAAGGCTTTGGAGTCCTGGCTGAAGCTTCCTCTTCCCCTCACACAAACAAAAGACCTTCTCTTAACCCTTATACCCTATAGCAACTACGCCGTCATGTGCGAGAGTGTTGTGGAGTGCTTACGGACGTCTCTAGCAGAATACGACAGCAAGAACCCACAGACTACTATAGATTTCATCCTACAACTTATGCAGCTAAATTCGGTGCTCGAAGAGGCTCTACAAGCCGATGATGAGAACACTGCTAGCCTGGTGTATGGGTTGTTCACCAGCATAGTAGAGAACCACTCGCGACTGCTGCTCACTGTTGCTTTGGAGGACCAGGGCGAGCGGAGAGCTGCTGTCTTGAAGCTGGTGGGTTTGCTGGTGCAGTGCAGTGGGACGGCGGGCCAGTATCCAACACACGAGACGCTATCTAATATACCATTCTCCGTCTGGTACACAATACAGGAGGACCTACTAACATTTTTCGAGGGTAACGAGCGTGAGCAGCTGAATGAGTTGTTCAGGCCAGTTTACCTGCAACTGGTGGACACTTTCCTACACAAGTCTCTGCTTCCTCCTGACGAGGCCCTCAGTGCTGAGGAACGAGAGCTCTTTAGGTGCTACAGGCAGGACATATGTGACAGCTATATGTACACATACTTCATCCTAAAGTGCGGCATGCTAGAGCAGCTGGAGAGACACCTACACAACAGCGTGGCTAGGATACAGCGCGATCCTGAAGACTGGAGGCCGTTAGAAGCTCTGCTTCACGCGTACGCCTCCGTTGCGGAGACTGTAGCAGACTCCGACACATACTACGTGCCCCGCTTCATACAGTCAATACCACAGATACCATTCGGGGAGAATATCCACCTCATTACAGTCACATTGTCTACATTAGGAGCATACGCAGACTGGCTAAACTATCACCAGGACCACCTGCAGCATGTGATCCCCCTGATGATAGCGGGACTCGTGAACGAGATGCTGGTTGGTGCCGCGTCTCAGGCCCTCAGGGACTTAACACTGGAGTGTCCCGTCACCATCACACCCTTCTCTTCTCCTATACTAGAGGCTTGTCAGAAAGCCCTGGTTCAGTTCCCCGTGGCTGACAGTGCAATAAAAGAGCGTATTGTGACAATCATCGCTCGGGTGCTGAGTGTAGGAGTGCCTCACGCCGCTGTTATTACGCACCTCAACCAGACCCTCACACCCATCATCACGGATATTGCAAACATTAAGGATGCTGTTCTTGCTAGTGGTTCCTACAGCAAGGAGCAACGGTTTCAGGTGGTTCGGCAACTGAAATTATTGGCGTGTTTGGCGCGGCATTTGAACGCCAACGTTCCTTTAAATGAGGTTGCTGCCCCATCCTCGGCACTTGAGCTCTCTGCTGCGCCTGCTACTGAGCAGCCGCCGCCCACCTCTACCACTTCTGCTGTCGTGGCGGAAGAGCAGCCGCTGTTGATGGTACTAAGACTGGTGCTGCCACTGCTAGAGCAACTCTCCGCCACAACAGCTAATCTTCCTGACATCGTGGAGGTGCTGTGCAAGCTGCTAAAGAACAGCGTTAGTACGCTACATGCAGAAGTGGAGCCGCTGCTGCCTCAGATCGTAGCAACGCTTAAGTGCCTTTATTACACAGCCATACATCCTGGTGTTCTCGACGTTACTAAAATGTTGCTGATGCTGTTTGGTCAGCCAAACAGTTCGCACTTATCAGAGTTGCGGCTGCTGGTGGAGACGGTTGTTAACTACACGCTGCAGCGCGTCAACAACGACCTGTGGAACTACACACACGTGGTGCAGGCGCTGCTCAACCTCACGCATCTGTGCAAGAAAATGCCCCACACACTACACCCGGAGCACCTTCATGCTCTCTTCGTTCTCGGTATCGAAGCACTTCGCCTGCCAGAGGAGAGCACAATCAAGTCTGCGAGCAGTTTCCTAAACCACTTCCTGCAGCTGAGCCGCGACTACAAGGGCGTCATCTACGAGCCGGTGGTGCGGCAGAACACTGAGCACTTCCTCCGCACCATCATTACCTGCATCTGCAACTCCCCCCGACACAGTCTGGTACCCATTGGCGAGCTGCTGTACTCTCTGTGCAAGCTGTACGGCGGACCAGAGCTGGTGGCTGTTTTTAGGAAATTGGAGGAGGACGACAAGTTCATGCCCGGCCGCATCAAGCAGGCCGACAAGAGAAAGTTTGCAACAGCAGTCATGGGAAGTATATGTGATTATGTTGGTATCCTGTCTTGCCAGAACGACGTAGGATTATGA

Transcript

Hgig_16035

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF03810	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08389	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF18773	Importin_rep	Importin 13 repeat	Repeat	Interproscan
PF18806	Importin_rep_3	Importin 13 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494	Domain	Importin-beta, N-terminal domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013598	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040520	Repeat	Importin 13 repeat	Interproscan
IPR040709	Repeat	Importin 13, repeat 1	Interproscan
IPR051345	Family	Importin beta-like nuclear transport receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-