Gene detail

Detailed information of Hgig_15438 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_15438	BETA-TUBULIN COFACTOR D	Chromosome15	172653337	172675253	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_15438

ATGTCCAACGAAAACACCAAATTCGAAGGCATTCGCATTGCGATAGCTCGCTTGCTCGACGCGGACCATCGTCCCTGTGACATCGTCAGGGACCTGAAGGTCTCCAAAACCACCGTGATGAAGGTCCAGAAGCAGGTCAAGAGTGGCGAGGGAGTCGACACCAAGCCTAGGAGTGGGAGGTCGAGGTCCGTCAGGACTCCGGCGGCCATCAAGACCGCCAAAAAGCTCGTGAAGAAGACCCCGAGGATCACCATCGCCAAGATCGCTCGAAAACTGAAAATCTTGAGGCGTTCCGGCGAAAGGCTCATCAAGGAGGACCTGGCGTCGAACTCTCGAAAGATTAGAGATGTGCCGAGCGTCGGAAATTCGGCCCCTGCGCCGAATCGAGCGAACCAAGGTCCTGCTGAACTTCGTGAAGAGCTCGGAGCACAGCAAGAAGGCGGACGATACCGTTTCCTGGGAGTTAGATCTGAACCCTCGGGTTCTACTTCTACTCCCCTACCACCCTCGACTGCTCCGGTCCTACGGCAGTTCTTATTTCTCCGCTTCCTCCCCCTCGTCCGAGACGGACTCACGAGTCCTCCCGGAGACAGGGTTCCTTTACCGTTCCGGAAGCCTTTCGCTCCTGACCTCAGTTTTCCAGCACTTTCGTACCCAACGGGGCACGATGAGGGCTGCACAGGCGAGTGGCTGAGTTTGCTGGGCCAGAGCGTTGTGTTCGTAGAGGAGGACGTGCGAACAGTGTCTGTAAAGGCCCTCTCTGCCCTCTGGTTTGCCTACTTTTCTCAGGATGACGCCAGTGCTCTTAATGTTGACACTGAAGATACTGGTGCCAGTTCTGTTAATGTTGACACTGAAAGTACTAGTGCCAGTAATGTGACCAGTGATACTGGTGACAGTGCCACTGGTAGTTGCAAGAAGTCACTACTGCCGAGTGAGATAATAAAAAAATACCTGTCATCGCTGAGCTGTGAGAGGGAGAATTACGCGCAAGGCATGGCTATGGCTTTAGGAGTGTTACCGCGGTCTGTATTGAAAGTGCACTGCAGTGCGGTGATCAGAGGATTGCTGTCCGCCTGCCTAGTGACACCAGAGACAGCTTCATGGGCAGCAACTCGCAGGGACGCCATTAGCAGCGTCGTATCAATCATACACACTATGGGGCTGAAAGACGACGGTTTCTCCCAGGAACTCTTAGACGCATGTATGTTGAGACTGCTGCGGTGTCTCGAGGACTATACCACTGACAGGAGAGGAGACGTGGGGGCCTGGGTCAGAGAGGCCGCTGTCACTGCTATACAGAGTATTCTACTACTGTCAGTACAACAGGACAGTGAGAGTAGCACGAACATCAGTACTCAAGTACGACCTAAAGCTGAGCATGTGTGTGGAGCCATCACCAGGATAACTCAGCTAGCTGTGGAGAGGATAGACCGCACTAGGAAAGTAGCAGGCAATTCACTCGTTGCTCTTTTCCATCACAAACCTTCAATCCCTGGTATCCCCGACAAGCAACACATAACTACAATGGTGCTATCGCACTCTTGGTGCAACACCGTTAACTGGGGCAGCGACCGTGAAACCTTCCCTGTGATGGCGAAACTGTTGCTGCTGCACGAGTACTCGCCCAGACTCATTATGGGTTTTGCTTACAGTCTCGGAGGAGTGTCTGCCAACCTGGCGCAGTCTAGCAGTGACGCTCTTGACAGTCACGTAACTACATTAGGGGAGTCGCCGTCGTTAGCTGACAACGCAATCGCTCCCACTGTCGCTGGGTTCGTCGGTACACTGTTGGATCTGTTGCAGGACACAGCTGTGCACGATAGATTATCACTACCGCTGCTCAAAACGTTCGAGCATTTCATGACTTCCACTTCGCTGCTTGATGAAGTTCTGGAAGAAGACCAAGCCCTATGTGAGCGCATGCTGTCGTGCCTGAAGAAGGAGTGCCAGGGTTGCCATGACTACCACAAGCTTGTCACCATCAGCGCTGTCATGTGCGAGATGCTGCGACTAAACTCCAATGTTACAAAACCTGTTATGAACCAGCTGCTGCTTTTCCTCGGCTATCAGTACCCTAAAGTACGGACGTTGACCGCTACAGCATTACTCACTGCACTGCAGGACTACTCGCCCGATCTGCTCGAGAGGAACGTGATACCGTCGGAAGACGTCCTCAACCAATTAATTGAGGTGTTGGAGAATACACCGTGGATAGAGGCAAACCTGGCAAACGTGAGACAAAAAAGAAACTTGTGCTGCACTCTATTGGGCCTGCCTGTTCCCATGCCTAGAACGAAGCCTTAG

Transcript

Hgig_15438

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12612	TFCD_C	Tubulin folding cofactor D C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022577	Domain	Tubulin-specific chaperone D, C-terminal	Interproscan
IPR033162	Family	Tubulin-folding cofactor D	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12658	BETA-TUBULIN COFACTOR D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0007021	Biological Process	tubulin complex assembly	Interproscan
GO:0007023	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333	Biological Process	adherens junction assembly	Interproscan
GO:0048487	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830	Biological Process	bicellular tight junction assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-