Gene detail

Detailed information of Hgig_11891 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_11891	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Chromosome11	70920685	71100289	-

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_11891

GTGGTGGTGAAGAGTAGCCAGCGTGATGATGGCAGCTACTCGTACAACACAACAACAGTCGTGCTGATGGTGGAGATTGTTAAACTCGTCGCAGCTCTCACCTTCTACCTCGCCAGGAGCTCATTATCCGTCCTCTTATCAGAGGTTTGGCTCCATAGGAAAGTTCTAGCACTGTACCTGGTGCCCAGTGCCCTGTACTGTCTCTACAACAATCTGGCCTTCGTTAACCTGGCCAACTATGACCCAACCACCTACTTCCTCCTGCTGCAGATGCGGGTGCTCGTCACTGGGGTTATATACCAGTGTATTTTTAAATTCGGCCGTTCCTCTGCCGAACCCTGTATAAAGTGGGTCTCCCTAAACAAAAATGTGCTTAGCTCAGGTGCCGAACTTAAACAAGTCAAAACCAGAAAGAGGAGCCAAGTGTGTGTCCAAAAGCAATTAGGACCATCATTGGATACAGGTGATAAGTTGCAACCAGCCTTCCCTGACGGGTTGGACAAGAGGTATCACAGGCTCTTACGCAAGAGATCCCTTCTACGATCAAGAGCTCGGAGTTTAAGGCGAGAGGATGGAATTAGAATGCTTGTCCCTTCTCCTACTCATGGCAGTTATTCGGGTGGGATTGTTATTGAGTCAGCTAAGATCGTCTGCTCGTGTGTGGCTGGAGTGTTTAACGAGCGCCTCCTGAAGGACCAGGGCGGGGGCGCCAGTATCCAGCTGCAGAACATATTCATGTACGCTGACAGCACTCTCTGCAACACTGCTGTGCTCCTCTTCACTGGTGCTTTACATCTGGCCTTCAGTCGGGCTGCTTTAGCTCAGATTGTGCTGTCGCCGTCAGTGCTGCTGGTGGTGTTCACGAGTGCTGCTCTGGGGCTGGTTACGAGCGTGTTCCTTAAGATGCTCAACTCGATACTCAAGGTGTTTGCTGCTGCCTTCGAGCCCGTGTCGCTGGCTATCTTGTGTTATGTGATCTTCGGTCAGCAGATTTCATTGTACACGGTAGTGAGCATTGCTCTGGTCACCAGTGCCAGCGTCATCTACGCCACACACCCTGTGGCAATCAACACCGGGAGCCCCTCTACTCAACACGAGTTTAATGACTTCTATCGTTCAGTGACGGGTTTTTTGTACAGAACTTTTCGACCATCCCAGCCTAGGGGGAATTTACTGAGCTATACAGAGGGAGGATATATTAGAAGCTATTCAGTGGTCCTTCCCTACTATGTCTTAGGGCTGAGATCTACCTGCGAAGATTTTCTTTCAGTTCGTACAGACTCCCTCAGGGATTGTTGGAGTAATTTCTACTCGACAATCTTTATACTTTCTCCAATATTTCGTATATTTATATATAGAGATGAGCAGGGTGGTTTCAGAAATGGAACAGGTTGTGTGGATCAGGTGTTTGCTTTGATAGAAGGTTGTTTGCAACTTATCACCGAGGTGAAGGTCTGTCTGATCAATAATCAAAGAATATCAGTCCGGTTTGCCAGTAACGCCAAGTCGGTGTTCAGACCCGTCAACTTCAACCTTAAGCCAAAGAAGGGGGACCTCCCCTTTTTGGACGACACACCCAGCAAGGCTTTCGAAAGGCCCAAGAACAAGCCACATGACCGACGACTTCAGGACCGAGTAGCCACTGCACATACGGAGGTACCAGATGAAGGATATGAGGATGACAGCGGCGAAATGAAGAGATATGGAAGATCTTTTAATGGTAGCAGAGAGGAAACTACGAAAAGATATGGAAAAACTTTTCATGATGCTAGAGGTGAAGTGACGGAAAGATATAGAAAATCTTCGAGGAGGACTTATGATGATGGTGTTAATAATACGTCCTTTAATGTTGATGATTCATTTGATGACGAAGAAGATGCATCAAGTGGAACTGTAGCTTACAACAGCAGAAAGTTTGAGTTCCTAAAGGTTAAAGGAACAGATAAGAAATACCCTGAACACATAGACAGAAAGTTACGGTTTCGTGATAATAGAGATGCTTATGTTGCTACTGAACCGAAGGGAACAGAGTACTTGTTTGGAATTTTCCCCGTGCTGTTAGCTCTACAAGCCGGCAGAAGACAAATCTACACAGTCTATTGCAAGTCTGGTCTGGAGAACAGAAACCCTAAGATTAAAAAAATACACGAACTAGCATTGGAAAAGGGTATTAAATTTGAGTTGATGGAGGGTAAGGAAATCAGAAAGATATTTACAGGTGACAATGTTCATCAAGGAGTATTTTGTTCAGCTAGTCAGCTTCCTATTGAAGTGTTTTCATTTGAAGAAGCGGAATGTCAAGACGAAGATCGGAAAACGAACAACTCCATCACCAGCAGCAGTAGTAGCATACGACCTTCAACTTCATCAGCAGTAATAGCATGTGAGGGAGACAAACAGCCTGATTACCTTCATGCGACTACTGAGGTAGCAGAATGTGGTGAGACTTCCACCCCCGTTGCTAGCAAATTAGCACGCCGGAAGGAGCCCCGGCTGTGGTTGCTGCTGGACCGGGTTGTGGACCCCATGAACCTGGGTGCCGTGCTGAGGTCCTCTTGCTACTTCGGTGTGTCCAGGGTACTGCTCACTAAATCTTGCGGCAACATCAGCCCAATTGTGAGCAAAGCCAGTTCAGGCGCGGTGGAGCTCATGGACATAAGTACTCTCCCGACGAAGCCTGCCGAGGTACTGAAGCAGCTGCAGCTCAGGGGCTGGCAGGTCGCCGTTACCATTGCAACAACAACAGCAGCCAGCAACAACAATGGAGGTTATCCCAGCTATCATCTCTCCTCGCTGTTTGAGGCAGAATTTTTTAAATCGCCATTACAGCGTATAGGTTTAAACTACGAAATAGCTAACATTTTGAACAATTCAACCAAATATAGCCTTAGGGCCCCGATCTACCTTAGAAGAACTTCTTTGCTTTCAGGTAACGAGGGGCGCGGTATATCGGACAGCATCAACAGCCTTGCCGACGTGGCCCTCACGGTGCCCTCTGTGGGGCCCCTTGGTCCCGCCCTGGGCTGTCTTAACGTCTCCGTCGCCACGGCCATAATGCTGCATTCTTTGACCACCAAGCAG

Transcript

Hgig_11891

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan
PF04142	Nuc_sug_transp	Nucleotide-sugar transporter	Family	Interproscan
PF08032	SpoU_sub_bind	RNA 2'-O ribose methyltransferase substrate binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR007271	Family	Nucleotide-sugar transporter	Interproscan
IPR013123	Domain	RNA 2-O ribose methyltransferase, substrate binding	Interproscan
IPR029026	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR029064	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR047182	Family	rRNA methyltransferase 1, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46103	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0000154	Biological Process	rRNA modification	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0015165	Molecular Function	pyrimidine nucleotide-sugar transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016435	Molecular Function	rRNA (guanine) methyltransferase activity	Interproscan
GO:0031167	Biological Process	rRNA methylation	Interproscan
GO:0090481	Biological Process	pyrimidine nucleotide-sugar transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-