Gene detail

Detailed information of Hgig_10515 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_10515	CULLIN	Chromosome10	18762715	18818458	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_10515

ATGATAACTGAAAAAAGACTCTATATTTGTGCCTTGAGTGAAACAAAGCTGAAGGGAAAGGGTGAGTTTATGATGGGCAGCATTAAAGGTGTGAAACCCGGAGTTGGAGAGGAATGTCGCGCAAGGGATGGAGTGGCAATTATGCTGAATGAAAGGATGTGGAACATGGTGAGGGATTGGAAAGCAGTATCGTCACGGATTTTGTGGGTCCGACTTAAATGTGGGAGTGAAAAGTGGGTAATAGTGAGTGCCTATGAGCCCGGAAGTGAAAAAACTGAAGAGGAAAGAGAAGAATTTTGGGAGACACTGAGTGAGTGTGTAATTAGGTTTGAACAGAGTGAGAAGATAGTCGTACTGGGTGATATGAACGCGCGAGTTGGAGACGTGGAAGTGGAAGAGGTGATTGGTAAGTTTGGTGTTCCTGGAGTGAACTGGGCAGGTGGAAGAATGGTACAGTTTTGTACAGAGGCTGGTCGTCTTGCAGGAAAGTCGTGGTTCAAGAAGAAGCGAGTGAATAAGTACACATGGCAGAGAGACGATGGAGCGGACGAGGCACTTATGGACTGGGTGTTAGTTGATAAGAGGTTAAAAGGCACCAGTGCTGGTGGTGCCACTAGTGCTGATAAGGCTACCGCTACTGGTAAGAAACGTGGTAGCAGGAAGATAGGGTTGGAAAGGAAAGGCATTACGATTGAAATTAAACTGGAAATAATAAATAAATTTGAGAATGGATACACAAATGCCCAAATCATGAGGGAATATGACGTTAAGCATTCAACCGTCTCTGATATTAGGAGGAGCAGCCAGAAAATACAGAAATATGCTATAGCAAAGACATGTGATGGTCCTATCCAGAATAGGAAGAGAGCTATGGGATCAGCAGTAGAGAATTTAGATGATGCTGTTTATAAATGGTTTATCCAGCAGCGTGTATCCAGGATGCCGGTGGGTGGAAATGAAATTCTAGACATCAGCACAGAATCAGCAGTAGCAATGTTGGGACGCAGCGGTGGCGCCAGCAGCAGCAGCAATAACATGTCTGGATCAGGAGGGCAGCAGAATGGTGGCAGTGCATCTAATCCACCGTGCCTTAAAATGACGGAGTTAGACACAATTTGGGGAGACCTGAAGCAAGGCATTGATCAGGTCTACAAAGGCGAGGATATGTCTCGGTCCCGATACATGCAGCTCTACACACATGTCTATAACTACTGCACCTCAGTGCAGCAACAGTCTATCAGCAAAAGCAGCACTGGCAGTCGGAGCAAAAAGGTGGCTGGTGGCAGTAGTGGTGGTGGAGGTGGCAGTGGCGCACAGTTTGTTGGGCTCGAGCTATACAAGAGAGTCAAGGACTACCTTAAAACTTATCTTCTTGCACTGCTTACGGATGGTACGGATTTAATGGATGAAGAAGTTCTACGATTCTACACGAAACAGTGGGAGGCTTACCAGTTTTCCAGCAAGGTACTAAACGGAGTGTGTGCTTACCTGAATCGGCATTGGGTGAAGAGGGAATGCGAGGAGGGGCATAAAGGCATCTATGAGATCTACCAACTAGCACTAGTCACGTGGCGTGATCATCTCTTCACACCGCTCAATAAACAGGTGACTAATGCAGTTCTGAAACTCATAGAGCGGGAACGCAATGGAGAGCCAATCAACACACGCCTCGTCTCTGGTGTTATGAACTGCTATGTCGAACTCGGTCTCAACGAAGAGGATCCCAGTGCAAAGGGCCAGAATCTGACCATATATCGAAAACATTTTGAGAAAACTTTCCTAGAAGACACAGAACGTTTCTACACTCGGGAAAGTTCTGAGTTCCTGCGCAGCAACCCCGTCCCTGAGTACATGAAGAAAGCTGAGGCCAGGCTGCTCGAGGAGAGGAAGAGAGTACAGGTTTACCTGCACGAAACCACTCTGGAGAAGTTGGCAGCCACGTGTGAGAAGGTGCTCATCAAGAGGCACCTGGAAGTGCTGCATTCGGAGTTCCAGCACCTCCTGCATGACGACAAACACGACGATCTCGCCAGGATGTTCCAGCTGGTCTTCAGAATACCTGACGGCCTGCCAGAGCTCAGGAGCTTGCTGGAGCAACACATAACCAACCAAGGCCTCACCGCCATTGACAGATGTGGAGACACTGTGATGAACGATCCTAAGCTCTACGTGTTGACCATCCTGAATGTTCACCGCAAGTACAACTCCCTCACATTGACGGCGTTTAACAACGACACTGGGTTTGTGGCGGCTCTAGACAAAGCTTGTGGCAAGTTCATTAATACCAATAACGTAACCAAAGCACCAAACTCGTCCTCCAAGTCTCCAGAGCTGCTCGCCAAATATTGCGATCTCCTGCTTAAAAAATCTTCCAAGAATCCAGAAGAAGCTGAATTAGAAGACACACTGAATCAGGTAATGATCGTGTTCAAGTACATAGAAGACAAGGACGTGTTCCAAAAGTTCTACAGCAAAATGTTAGCCAAGCGGCTGGTGCAGCACATGTCTGCTAGCGACGACGCTGAAGCCTCCATGATCTCCAAACTGAAGCAAGCGTGTGGCTTTGAGTACACTTCCAAACTACAGAGGATGTTCCAGGATATCGGCGTGTCGAAGGATCTGAATGATCATTTCCGTCGTCATCTTAACACGTTGGCGTCTACTACAGGAGCAGATACCCTGGACCTGGACTTCAGTGTTCAGGTCCTCTCGTCAGGGTCATGGCCCTTCACACAGGGTGCTACTTTCTCTCTGCCACCTGAGATGGAGCGGTGCTTGTCTCGATTCACAACGTTTTACTCAGCTCAGCACAACGGTCGGAAGTTGAGCTGGCTGTACCCGATGTCTAAAGGAGAGGTGGTGACCAACTGCTTCAAGAACAGATACACATTGCAAGCCTCTACCTTCCAGATTGGTGTACTACTGCAGTTTAACGTAGCCACGTCTTGGAATATTGGGCAGTTACAGGCAACAACCAGCATCCCACTAGACATGCTACTGCAAGTCATCAGTATTTTGCTCAAAGTGCGGCTGGTGGAGTGCGAGGAAGGAGAAGACCCAAACAACATCACCAATGACTCCGTTGTTTCACTTTTCACTAACTACAAGAACAAGAAACTACGCGTCAACATCAATGTGCCTATGAAAACTGAAATGAAGATCGAGCAAGAGTTGACACACAAGCACATAGAGGAGGACCGTAAGCTGCTGATCCAGGCCGCTATCGTTCGTATCATGAAAATGAGGAAGGTTGCTAAGCACCAGCAGCTGCTCATGGAGGTTCTGCAGCAGCTCTCTCCACGCTTCAAACCCAGAGTCCCTATCATTAAGAAATGCATAGACATTCTAATCGAGAAGGAATATCTGGAGAGAATAGACGGTCAGAAGGACACCTACAGTTACCTTGCC

Transcript

Hgig_10515

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888	Cullin	Cullin family	Repeat	Interproscan
PF04218	CENP-B_N	CENP-B N-terminal DNA-binding domain	Domain	Interproscan
PF10557	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001373	Domain	Cullin, N-terminal	Interproscan
IPR007889	Domain	DNA binding HTH domain, Psq-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR016157	Conserved_site	Cullin, conserved site	Interproscan
IPR016158	Domain	Cullin homology domain	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR019559	Domain	Cullin protein, neddylation domain	Interproscan
IPR036317	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR045093	Family	Cullin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932	CULLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-