| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| Hgig_09424 | PENTRAXIN | Chromosome9 | 65941831 | 66165933 | - |
| CDS | |||||
| Hgig_09424 | |||||
| Transcript |
| Hgig_09424 |
| Protein |
| Hgig_09424 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00057 | Ldl_recept_a | Low-density lipoprotein receptor domain class A | Repeat | Interproscan |
| PF00059 | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF00354 | Pentaxin | Pentaxin family | Domain | Interproscan |
| PF02931 | Neur_chan_LBD | Neurotransmitter-gated ion-channel ligand binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001304 | Domain | C-type lectin-like | Interproscan |
| IPR001759 | Family | Pentraxin-related | Interproscan |
| IPR002172 | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR006202 | Domain | Neurotransmitter-gated ion-channel ligand-binding domain | Interproscan |
| IPR013320 | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR016186 | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR016187 | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR018000 | Conserved_site | Neurotransmitter-gated ion-channel, conserved site | Interproscan |
| IPR023415 | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR036055 | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR036719 | Homologous_superfamily | Neurotransmitter-gated ion-channel transmembrane domain superfamily | Interproscan |
| IPR036734 | Homologous_superfamily | Neurotransmitter-gated ion-channel ligand-binding domain superfamily | Interproscan |
| IPR038050 | Homologous_superfamily | Neuronal acetylcholine receptor | Interproscan |
| IPR051360 | Family | Neuronal Pentraxin and Related | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19277 | PENTRAXIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005230 | Molecular Function | extracellular ligand-gated monoatomic ion channel activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006811 | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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