Gene detail

Detailed information of Hgig_09311 in Hirondellea gigas Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
Hgig_09311	ZINC FINGER PROTEIN 294	Chromosome9	40015172	40135807	+

Gene Structure

More details in Jbrowse Sequence

CDS

Hgig_09311

ATGAAGGAAGGTGATGAATCTTTATGTTCAGAGGAGGCAACAGCTTCTCAATGGGAGAATATAGAGCAGGTCATAGCTGTACAGGACCGTGAAACAGAAATTATGGATGTTGTACCTGGTAGTGGAAGACGTAGACGAGAGTCTTCTGATGATCAAGAAGATGTTGACATAACAGATGATAGAGGTGTTGACTCTGTAGAGGCCAGAGGTGAACCATGTCCTAAACGCAGGACTGTTGACAGCAGGTTACCCATAAATAAAAATGTAACGCTGTTATCCTCTACTGATGTTAATGTTCCTGCTAGTGAATTCACTGTAAGCAAAAAAAAAGATGACAGAAGGCATACTGCCAATAAATTAAGCTTTGTACCAACCAGGTCTATGATGTCAAATAATAAATCTGTTATAATTGTAAAACCTATCAGTGATGGTAAATATTTTTTAACTGATCCAGTTGGTCTTGCCAAAGGCATCCAAAATTCTTTGTTCAATAGAAAGGATCGCAAGGATATCAGAATAAATAAACATAAAAATTTATTGGTTATTGAATTCAATGACATATCAGATAGTGATATGAACAAGCTGTTAAAGATTGACAAAATTGGCAAGTGGACTGTGGAGTGTTATGTACCAATGTCTCAGCAGAAAGTATCTGGAGTAATTAAGGGAGTTCATCCATCTGTTGACTTGGAAGAACTTTATCCTTTGATGACAGTAACTAATAGTAATGCTAAAATATTAAAGTTAACAAGACTTCCCAAATTTGTAAACCATGTTAAATCTCCTTCTGCAGCAGTAAAGATAGATTTTGATGGGGAGGCATTGCCTGGTAAGGTTTATGTGGACTTCATGTCTTATGTTGTTCATCCTTACGTGGCTCCTCCATTGAGGTGCTATAACTGTCAGAGGATTGGCCATACTGCCAATGGCTGTGATGCTAAACCTCGTTGTTTGCCATCCAGCAGTGTGCGGTCAGCTGAATTGCTGGGAGGCATCGGCAACAACAGCGTTGGTTTTCTAGGGTTTGGTATGGGTGCCAATGCCCCATCCTCCCTGCTGCCTAATGACAACTGCGTCACTCAGGACTTCAGACTTGCACTCAGAAAGATGGCCAAGAAAGATGCCATCACTAAAATAAAGGCCTTACAAGAGTTTGACGAGCTGATCAAGAGTGAAGACATGAGTTCCATCAAGACAGCTCTACCATTCTGGCCGAGACTCTACTGCAAACTTTCACTTGATATTGAGAAGAAGGTTCGTGAGAGCGCCCAGGTTTGTCACGGTCACCTGGCGCTGAAAGTTAGCAAGCTGTTGGCTCCTTACCTTTGCTCTCTCGTGCCCTGCTGGCTGCTGGCCATGTGTGACCCGTACATCGCTGCTGCTTCTGCTGCCACACACGCATTCCAGAATGTGTTCTCTGAAGATAAGCGTCCAGGTGTGCTGTTCCATTGCAGCAAAGAAGTGGTTGACTATATCACAGATAATCTCTTCCGACAGACAGCTGACACACTTTCCGATCCCAAAACCACTACCCCAGTGGAGCGTGAGGACAAGTACATACGTGTGGTGTGCAGTACACTGGAGAGCATCTCCCTGTTACTGAGGCTCACGCAGAGCCATCCTGGTTACGAGACGCAGCTGCTGCCGTTAGTCACAAACCTGCTACACGAGCCGCAGTTTTGGAAGATACATAAACATCCAAGTCCCAAGGTTCGCAGTCTGTTCTACCATTGCGTGAGCGAGGTGACGAGCAGCAGCGCTTGTGACATAACTGCAGCGTGCCAGGCGGTCAGGGCAGGACTCTGTGACGTTGATGCCGCTGTGCTGCCTCCAGCATACACTGCTCTGCTGCACCTGGCTCATAAACACCCGTTGTGTTGGGAGGAGCTGGGCTGCAGTAGCAAGAAGCCGGTAACTGAGCGGCTGCTACGGCTGATGTCTGATGGCTGCCGCGGTGTTGCAACAGACGTGGCACCGCTGCTGCTGCCGCTGCTCGCTGTCATCCCCCACTCGGCTCTCACGCAGCCGGCGGAGTTCTACAGCAAGCTGCTGCAGGCCATTGCTAATAATGTTCTACGGTGCGAGATCTTCAAGAGTCAACAAGAGGTGGCGGTGCTGCAGCAGACGCTGTTTGAGTGCGTCAGGTTGCTGTCCAAAGATGCTACGCTCGACCGTGATTTCTGGCACAACGTCATCACGAACATGATTGGAGAAGTAATTCAGCTTGCCATTCGGACAACGCGGCAACTGGACAGCTGTGCCACGTTTGAATCCGTCGTGTCACTGTCTCTGTTCTGGACGCGTCGAGCTGTCAAACAATTTGCTAACAGTTCTACTGACGAAGGGCCGTTTCTGAAGCAAAAAACTGAAGCCGTTTCAGCAAATTTCACTCAAGATTTGAACGACATATTGTGGAATGTCTGTTTTACTCAATGTATATTAGCGCTTGAAGACCCTAATCGATTTCAGTTACAACAAATATGTTTGTTACTACGTATTATTCAAAATCCAAAGTCTCACACTAACTCTAAAAAGAGCGGCGTTAAATTTGCTCCATCAGTTACCAAATCACCAACGGATATTATATACAACACATCTAATACTTCAATTCTAACTGACGAAAGAGATCAATCTTCCCAGGGAGGCGACAGAGAAGTCTTCAACTCTCAATTCCAAAACTGCGTCGACAGCGTAAGCAAACTCGTTACTGACAGCTACAAGCTATACAAAAACGGGGAGTCAGACCTTAAGATTAATTACCTGAAGCTGTTTGCAGAACTGCTCACAGTCTTTGAAGAGTTTGAGCCGTACGGAGGGTTGCTAAAAGATTATGAAACCAGTGGTGACGATGGGGAATCTTGCTATATGTTCGTGTTGCATGTTTTGGTCCCGGAACTTGAACACTGCGACTACGGTGTGCAGTGCGTTCTAGCGCAGGTGTTGCAATCGCACCTGCTAAGACTCATGCCTGGTCAACAAATGCTGGTTATGGAAGCCATCCTGAGGACGAGTAGCGTAGAGGCGCTGCGTGCAGTGCTGGAGAAGCAGCAGCAGCACAAGGGACAGTTGCCTGACAGCGTGAGGGCGTGGCTGTCCTCTGCCCCGCTGGGCGCGAGGCTCGTGAGGTTACTCAAGGAAGCTCTCGCCCTCACCATCGCCCTGGCGTACGAGAGGCAAGACATTGCTAACGAGGAGCGGCGGCGTCGCGCTCGTGGTAAACAACGGCGGGAAGATTGTTCTGGAGAGGAACTTGAAGAAGAGTCCGTTTTGGTGGCTCATAATCAGCGTCAGCACCTTGTTGCCCTCGTGCAGATGGTGTTGGCTGCTGAGGTCTCACCACACAATGCTTCTCCTGTTCAAGCGTTCCAGTTCAGCAGCAACTACATCTCCCAGATCCTAGTGGTGCTACACACGTCTTTGCCAACAGAGCTTCACGTACTACACCACGAAGACAGCGCCAGCAGCACAGTCAGCAACGTGGAACTGGTCGTGCAGCTGGCGACAACAGTATTCAGCAGCAACGACTGCTGGCACCTGCAACACACCTACAGACTCTTGCATTCGCTCTTCCTCATGCTGTGTCCTGAAGATCTGATTCTTGCGTTGTCGTCGTCGTCTCAGAAGAACGACGATGAAGAGTCGCAGAAGGAACTGCACTCGCATGTTGACCAGAGTATTGTTTTGGAGAACACTATCCTGCCGCCTCGTGTTGCTGATGCTTTGAGGGATTTGGTGTTTCTAGCTTTCTCGAAACTAGTTGCGTTTGTTGTACGAGATGAACAATCGAAAAAGACGAGTACTGAGGACCAATCTGTTAAGGAAGGCGGCAATGTTAATATTGGAGTTGAGTACAACAAGTGCTTAAAGGGAATTTTTGAGCACATTATTCTGCTGGTGGGTAACCAGCGTTGCAGCTACGGTTCAGCGTTGTATTTGGCGGAGCTGAGCAACGAGTTGCTCATGATAATCTCAAATGAAGGAACAGGTGTGGATGACTGCGACCTGCCACTGGACTGCGATCGTGTACGGGAGGCGTTTGATTTGCTGCTGCCGTCTGAAGGCTGCTGGGCGCAGTGGGAGGCGCTCATGAGTCCCATCTACCTAGCGCCCACCGTGCTACTAGGACCCTACAACTTCAGGAGATGCCCCCTGCCACGCAACATGCGGGAAGCAATCAGCTGGGACGACAGCTACACCAGAGCTGCCGTGTTCCTAAGCACAGTGCTAGCCAGGATCAGCAAACCTAAGCACCTGCCCTCCACTACAACCGCTGCTACTCCACACACCACCGCAACCAGCAGCGGTGGTTCAGAAGCAGTAGATGCCGGTGTAGACAGCACCAGTAGTACTACTGTACACGGTGATGTTTTTGTTGTTCAGATCTCGTTAGGCCCGTACATCAGCCTGGCGTGTGTGTGTGTGCACGCAAGCTATTACCTGGAGACCATGGTGCAGTTGAGTCATGCCCTCAACCTCCAGCAGAGTACCGCATCCTCACTGGACTCGGTTGTGGAAACGCTCTCAGAAAATACCAGCACTCTGATTGCTCGTGTTAACCGTGGCAACTTGCAACAAGTGAGCAAAGTTGTGCGCGACCTGGCAGCGGGCAGCGAGACGGGGCTGTGGTGTGTCACGCTCATGAGGTTGCTGGCCGACTACAAAAAACACATAAACGTTGACAAGTTGATGGACGGGCTGGACCTACAGGCCTTTAATGCTACCGCTGTCAGACAGGTTTTGTTGGAGTATTTACCGACAACTATAGGAGTGTCAACACTACTGGAGACAGAGGTATCCAGACTATCAACTCTAACCGACGACCCTTTCAGTGGTGTGGACGTGTTGTCAGTGGTGGCCAGTCTGTTGGCTCGTGGTCCAGCTCCTGTGCCTGTTGTGCACGCTGTCATGGACATCATACTGCACTGGTGGAAGCACGCTGACTCTGTCTTCTTGTTCGCTGCCGATGTTAGTGTAAACAGCATCACAGCAGATGACCTGACCGTGGTGCTGTGTGTCGTGCGGGCGCTGCGTGCCTTGCTGAAGCACCACGTCACTCAACTCACAGCGCTACACTGGGAGCGACTGCTCTGTGCCACCACCAGCTGGGTGCAGTCACTACAGGACTCGTCTCAGAGTCTGGAACAAGACTCGCTGCTCGGATCATTCGTGTGCGCCGTGGCTTCGCTCGTCGCTACCATCGAAAACATCATGCAGAATCTCAACGACAAAGCCGGTGCTGCAATCAGGGACAGGTTACCTGAGAAATTGCAGCAGGAGTGGCAGGAGTTCTTCAGTAGTTTCTTGCATACTACTTTGCTCACACTCTATGTCAAAGTTGAAGGTTGGTACAGATCAGGATCGGGTCGCAGCGTGCTGCAGTATTGCGTGTGTCGCGACCTGTGCCGCTACGCTGCCACTGTGCCTGTTAGGGACCTCATCCAACACACACTGCCGCCACTGCATCACCAGGAAGACATCGACCAGCAACAGAATCTGCCGGACAACATACAGGTGAACCAGATACTGTATGCTGATGACACTGCACTGGTAGCAGATGAAGAGTGTAAGTTGCAGAGGCTAGTCAGTGAATTTGGGAGAGTATGCGAGAGGAGGAAATTGTCTGTGAATGTTGCAAAGAGCAAGGTTATGAGGGTAACGAGAAAGGAGAATGTTGGTGACATTGAGATCACCTTGAATGGAATAAGAATGGAAGAAGTTGACTGTTTTAGATATTTGGGAGTGGATATTGATAGAGATGGTGGAATGAGCGAGATGAAGCATAGAGTAACTGAATGA

Transcript

Hgig_09311

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR039795	Family	E3 ubiquitin-protein ligase listerin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-